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Topic: SingleCell or SequencingData or CancerData

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Release: Release 2.14 (2014)

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85 packages on Bioconductor tagged SingleCell or SequencingData or CancerData, most distinct IPs first

SingleCell, SequencingData and CancerData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
ALL
A data packageRobert Gentleman		Robert Gentlemanexperiment5 May 20264,1717
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
bcellViper
Human B-cell transcriptional interactome and normal human B-cell expression dataMariano Javier Alvarez		Mariano Javier Alvarezexperiment5 May 20262,1777
pasilla
Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.Alejandro Reyes		Alejandro Reyesexperiment5 May 20261,554108
golubEsets
exprSets for golub leukemia dataVince Carey		Vince Careyexperiment5 May 20261,2077
RNAseqData.HNRNPC.bam.chr14
Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cellsHervé Pagès		Hervé Pagèsexperiment5 May 20261,0690
bladderbatch
Bladder gene expression data illustrating batch effectsJeffrey T. Leek		Jeffrey T. Leekexperiment5 May 20261,0497
pasillaBamSubset
Subset of BAM files from "Pasilla" experimentHervé Pagès		Hervé Pagèsexperiment5 May 20269970
GSVAdata
Data employed in the vignette of the GSVA packageRobert Castelo		Robert Casteloexperiment28 Jul 202695578
Illumina450ProbeVariants.db
Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probesTiffany Morris		Tiffany Morrisexperiment5 May 20266900
lungExpression
ExpressionSets for Parmigiani et al., 2004 Clinical Cancer Research paperRobert Scharpf		Robert Scharpfexperiment5 May 20266827
gageData
Auxillary data for gage packageWeijun Luo		Weijun Luoexperiment5 May 20266230
yeastCC
Spellman et al. (1998) and Pramila/Breeden (2006) yeast cell cycle microarray dataSandrine Dudoit		Sandrine Dudoitexperiment5 May 20265927
ALLMLL
A subset of arrays from a large acute lymphoblastic leukemia (ALL) studyB. M. Bolstad		B. M. Bolstadexperiment5 May 202659012
h5vcData
Example data for the h5vc packagePaul Theodor Pyl		Paul Theodor Pylexperiment5 May 20265870
yeastNagalakshmi
Yeast genome RNA sequencing data based on Nagalakshmi et. al.Bioconductor Package Maintainer		Bioconductor Package Maintainerexperiment5 May 20265870
harbChIP
Experimental Data Package: harbChIPVJ Carey		VJ Careyexperiment5 May 202658116
DLBCL
Diffuse large B-cell lymphoma expression dataMarcus Dittrich		Marcus Dittrichexperiment5 May 20265689
DMRcatedata
Data Package for DMRcateTim Peters		Tim Petersexperiment5 May 2026522208
CLL
A Package for CLL Gene Expression DataRobert Gentleman		Robert Gentlemanexperiment5 May 202650812
maqcExpression4plex
Sample Expression Data - MAQC / HG18 - NimbleGenBenilton Carvalho		Benilton Carvalhoexperiment5 May 20265060
leukemiasEset
Leukemia's microarray gene expression data (expressionSet).Sara Aibar		Sara Aibarexperiment5 May 20264967
parathyroidSE
RangedSummarizedExperiment for RNA-Seq of primary cultures of parathyroid tumors by Haglund et al., J Clin Endocrinol Metab 2012.		no date on record464
colonCA
exprSet for Alon et al. (1999) colon cancer dataW Sylvia Merk		W Sylvia Merkexperiment5 May 20264467
breastCancerVDX
Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX).Markus Schroeder		Markus Schroederexperiment5 May 20264370
hapmap100kxba
Sample data - Hapmap 100K XBA AffymetrixBenilton Carvalho		Benilton Carvalhoexperiment5 May 20264340
hapmapsnp5
Sample data - Hapmap SNP 5.0 AffymetrixBenilton Carvalho		Benilton Carvalhoexperiment5 May 20264330
JASPAR2014
Data package for JASPARGe Tan		Ge Tanexperiment5 May 202643015
leeBamViews
leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009VJ Carey		VJ Careyexperiment5 May 202642858