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hapmapsnp5

Bioc current

Sample data - Hapmap SNP 5.0 Affymetrix

v1.54.0 · Package record · experiment · GPL

Release Lineage

Entered 2.13 · Oct 15, 2013

Current · Requires R 4.6

1.0 In 26 of 49 releases 3.23

Description

Sample dataset obtained from http://www.hapmap.org

Advisories

None published for Bioconductor

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

1 0 exported

Complexity

1 avg / 1 max

Call network

1 nodes / 0 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

63

Files

9

Compiled share

0%

Has compiled src

No

Language breakdown

R 15 (23.8%)Docs 48 (76.2%)

API

Exported functions

1

Internal functions

0

Testing

Has tests

No

Test-to-code ratio

0.00

testthat edition

–

Docs

Roxygen coverage

–

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

–

Unsafe pattern score

0

Dep constraint coverage

–

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

–

System requirements

–

C++ standard

–

License

GPL

License flags

not SPDX, not OSI

History

Versions

26

First release

2013-12-13

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

–

Dep drift

0

LOC over versions

v2.13: 63 LOCv2.14: 63 LOCv3.0: 63 LOCv3.1: 63 LOCv3.2: 63 LOCv3.3: 63 LOCv3.4: 63 LOCv3.5: 63 LOCv3.6: 63 LOCv3.7: 63 LOCv3.8: 63 LOCv3.9: 63 LOCv3.10: 63 LOCv3.11: 63 LOCv3.12: 63 LOCv3.13: 63 LOCv3.14: 63 LOCv3.15: 63 LOCv3.16: 63 LOCv3.17: 63 LOCv3.18: 63 LOCv3.19: 63 LOCv3.20: 63 LOCv3.21: 63 LOCv3.22: 63 LOCv3.23: 63 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

In the Bioconductor 3.23 release
READMENoVignettesNoNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION
Help pages
1includes a package overview page
Examples that run
0%1 hold no code
Exported functions with examples
not tracked
Documented parameters
not tracked
Return-value docs
not tracked
Help pages citing references
100%

Repository practices

Bioconductor git repository

Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.

No development-tooling practices detected in the Bioconductor git repository.

Topics

Maintainer
Benilton Carvalho

Available on

CRANr2uBioconductorautoCRANCOPR

Suggested by (1)

People (from the free-text Author field)

Cite

Cite this package

Run in R for the authors' entry:

citation("hapmapsnp5")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for hapmapsnp5 version 1.54.0 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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