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Topic: SingleCell or Coverage or GeneRegulation

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Release: Release 2.11 (2012)

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16 packages on Bioconductor tagged SingleCell or Coverage or GeneRegulation, most distinct IPs first

SingleCell, Coverage and GeneRegulation in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
GenomicRanges
Representation and manipulation of genomic intervalsHervé Pagès		Hervé Pagèssoftware28 Apr 202656,97410
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202630,33728
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataRory Stark		Rory Starksoftware21 Jul 20262,490141
chipseq
chipseq: A package for analyzing chipseq dataBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20261,62654
QuasR
Quantify and Annotate Short Reads in RMichael Stadler		Michael Stadlersoftware28 Apr 20261,551114
qpgraph
Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics DataRobert Castelo		Robert Castelosoftware28 Apr 20261,49581
baySeq
Empirical Bayesian analysis of patterns of differential expression in count dataSamuel Granjeaud		Samuel Granjeaudsoftware28 Apr 20261,36420
nucleR
Nucleosome positioning package for RAlba Sala		Alba Salasoftware28 Apr 20261,14576
BCRANK
Predicting binding site consensus from ranked DNA sequencesAdam Ameur		Adam Ameursoftware28 Apr 20261,13815
MEDIPS
DNA IP-seq data analysisLukas Chavez		Lukas Chavezsoftware28 Apr 20261,093102
tigre
Transcription factor Inference through Gaussian process Reconstruction of ExpressionAntti Honkela		Antti Honkelasoftware28 Apr 20261,01350
GSRI
Gene Set Regulation IndexJulian Gehring		Julian Gehringsoftware28 Apr 202693664
CNAnorm
A normalization method for Copy Number Aberration in cancer samplesStefano Berri		Stefano Berrisoftware28 Apr 20268082
GRENITS
Gene Regulatory Network Inference Using Time SeriesEdward Morrissey		Edward Morrisseysoftware28 Apr 202666831