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Topic: VariantAnnotation or Bayesian or ExperimentData

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Release: Release 2.1 (2007)

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36 packages on Bioconductor tagged VariantAnnotation or Bayesian or ExperimentData, most distinct IPs first

VariantAnnotation, Bayesian and ExperimentData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202644,6566
pcaMethods
A collection of PCA methodsHenning Redestig		Henning Redestigsoftware28 Apr 20267,21410
msdata
Various Mass Spectrometry raw data example filesSteffen Neumann		Steffen Neumannexperiment5 May 20261,1620
puma
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)Xuejun Liu		Xuejun Liusoftware28 Apr 20261,03355
affylmGUI
GUI for limma Package with Affymetrix MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 202696755
limmaGUI
GUI for limma Package With Two Color MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 202690511
ChAMPdata
Data Packages for ChAMP packageYuan Tian		Yuan Tianexperiment5 May 202679711
FlowSorted.Blood.450k
Illumina HumanMethylation data on sorted blood cell populationsAndrew E Jaffe		Andrew E Jaffeexperiment5 May 2026522144
RforProteomics
Companion package to the 'Using R and Bioconductor for proteomics data analysis' publicationLaurent Gatto		Laurent Gattoexperiment5 May 2026462144
hapmapsnp6
Sample data - Hapmap SNP 6.0 AffymetrixBenilton Carvalho		Benilton Carvalhoexperiment5 May 20263860
ELMER.data
Data for the ELMER packageTiago Chedraoui Silva		Tiago Chedraoui Silvaexperiment5 May 202634911
oligoData
Dataset samples for the oligo packageBenilton Carvalho		Benilton Carvalhoannotationno date on record31953
davidTiling
Data and analysis scripts for David, Huber et al. yeast tiling array paperWolfgang Huber		Wolfgang Huberexperiment5 May 202631576
GeuvadisTranscriptExpr
Data package with transcript expression and bi-allelic genotypes from the GEUVADIS projectMalgorzata Nowicka		Malgorzata Nowickaexperiment5 May 20262950
Hiiragi2013
Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineagesWolfgang Huber		Wolfgang Huberexperiment23 Jun 202628867
pd.atdschip.tiling
Platform Design Info for Affymetrix Atdschip_tilingKristof De Beuf		Kristof De Beufexperiment5 May 202627353
HD2013SGI
Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotypingMike Smith		Mike Smithexperiment5 May 202626987
ConnectivityMap
Functional connections between drugs, genes and diseases as revealed by common gene-expression changesPaul Shannon		Paul Shannonexperiment5 May 20262320
curatedBreastData
Curated breast cancer gene expression data with survival and treatment informationLevi Waldron		Levi Waldronexperiment23 Jul 202623177
mammaPrintData
RGLists from the Glas and Buyse breast cancer studiesLuigi Marchionni		Luigi Marchionniexperiment5 May 20262220
FlowSorted.DLPFC.450k
Illumina HumanMethylation data on sorted frontal cortex cell populationsAndrew E Jaffe		Andrew E Jaffeexperiment5 May 2026215144
MMDiffBamSubset
Example ChIP-Seq data for the MMDiff packageGabriele Schweikert		Gabriele Schweikertexperiment5 May 20262120
FlowSorted.CordBloodNorway.450k
Illumina HumanMethylation data on sorted cord blood cell populationskristina gervin		kristina gervinexperiment5 May 2026211144
ChIPXpressData
ChIPXpress Pre-built DatabasesGeorge Wu		George Wuexperiment5 May 20262117
Single.mTEC.Transcriptomes
Single Cell Transcriptome Data and Analysis of Mouse mTEC cellsAlejandro Reyes		Alejandro Reyesexperiment5 May 20262030
Affymoe4302Expr
Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data PackageZhicheng Ji		Zhicheng Jiexperiment5 May 20262020
ccdata
Data for Combination Connectivity Mapping (ccmap) PackageAlex Pickering		Alex Pickeringexperiment5 May 20262000
Fletcher2013b
Master regulators of FGFR2 signalling and breast cancer riskMauro Castro		Mauro Castroexperiment5 May 2026199153
msPurityData
Data to test the msPurity packageThomas N. Lawson		Thomas N. Lawsonexperiment5 May 20261990
Affyhgu133aExpr
Affymetrix Human hgu133a Array (GPL96) Expression Data PackageZhicheng Ji		Zhicheng Jiexperiment5 May 20261960