Packages
17 packages on Bioconductor tagged Transcription or SingleCell or QualityControl, most distinct IPs first
Transcription, SingleCell and QualityControl in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| affyPLM Methods for fitting probe-level modelsBen Bolstad | Ben Bolstad | software | 28 Apr 2026 | 2,430 | 22 |
| beadarray Quality assessment and low-level analysis for Illumina BeadArray dataMark Dunning | Mark Dunning | software | 31 Aug 2026 | 1,740 | 65 |
| affylmGUI GUI for limma Package with Affymetrix MicroarraysGordon Smyth | Gordon Smyth | software | 28 Apr 2026 | 1,194 | 55 |
| limmaGUI GUI for limma Package With Two Color MicroarraysGordon Smyth | Gordon Smyth | software | 28 Apr 2026 | 1,165 | 11 |
| OLIN Optimized local intensity-dependent normalisation of two-color microarraysMatthias Futschik | Matthias Futschik | software | 28 Apr 2026 | 1,123 | 11 |
| altcdfenvs alternative CDF environments (aka probeset mappings)Laurent Gautier | Laurent Gautier | software | 28 Apr 2026 | 1,113 | 23 |
| arrayQuality Assessing array quality on spotted arraysAgnes Paquet | Agnes Paquet | software | 28 Apr 2026 | 942 | 13 |
| OLINgui Graphical user interface for OLINMatthias Futschik | Matthias Futschik | software | 28 Apr 2026 | 864 | 17 |
| MANOR CGH Micro-Array NORmalizationPierre Neuvial | Pierre Neuvial | software | 28 Apr 2026 | 855 | 9 |
| spikeLI Affymetrix Spike-in Langmuir Isotherm Data Analysis ToolEnrico Carlon | Enrico Carlon | software | 28 Apr 2026 | 750 | 4 |
| Harshlight A "corrective make-up" program for microarray chips | no date on record | 621 | |||
| simpleaffy Very simple high level analysis of Affymetrix data | no date on record | 517 | |||
| rama Robust Analysis of MicroArrays | no date on record | 449 | |||
| affyQCReport QC Report Generation for affyBatch objects | no date on record | 401 | |||
| splicegear splicegear | no date on record | 372 | |||
| spotSegmentation Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots | no date on record | 269 |