Packages
23 packages on Bioconductor tagged Transcription or Clustering or Network, most distinct IPs first
Transcription, Clustering and Network in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| RBGL An interface to the BOOST graph libraryBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 10,698 | 9 |
| Mfuzz Soft clustering of omics time series dataMatthias Futschik | Matthias Futschik | software | 28 Apr 2026 | 2,353 | 16 |
| MLInterfaces Uniform interfaces to R machine learning procedures for data in Bioconductor containersVincent Carey | Vincent Carey | software | 28 Apr 2026 | 1,628 | 120 |
| hopach Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)Katherine S. Pollard | Katherine S. Pollard | software | 28 Apr 2026 | 1,337 | 9 |
| EBarrays Unified Approach for Simultaneous Gene Clustering and Differential Expression IdentificationMing Yuan | Ming Yuan | software | 28 Apr 2026 | 1,284 | 11 |
| made4 Multivariate analysis of microarray data using ADE4Aedin Culhane | Aedin Culhane | software | 28 Apr 2026 | 1,279 | 38 |
| affylmGUI GUI for limma Package with Affymetrix MicroarraysGordon Smyth | Gordon Smyth | software | 28 Apr 2026 | 1,194 | 55 |
| altcdfenvs alternative CDF environments (aka probeset mappings)Laurent Gautier | Laurent Gautier | software | 28 Apr 2026 | 1,113 | 23 |
| adSplit Annotation-Driven ClusteringClaudio Lottaz | Claudio Lottaz | software | 28 Apr 2026 | 1,072 | 51 |
| GraphAT Graph Theoretic Association TestsThomas LaFramboise | Thomas LaFramboise | software | 28 Apr 2026 | 1,023 | 21 |
| bioDist Different distance measuresBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 1,000 | 8 |
| ctc Cluster and Tree Conversion.Antoine Lucas | Antoine Lucas | software | 28 Apr 2026 | 979 | 1 |
| clusterStab Compute cluster stability scores for microarray dataJames W. MacDonald | James W. MacDonald | software | 28 Apr 2026 | 894 | 7 |
| SBMLR SBML-R Interface and Analysis ToolsTomas Radivoyevitch | Tomas Radivoyevitch | software | 28 Apr 2026 | 834 | 7 |
| geneRecommender A gene recommender algorithm to identify genes coexpressed with a query set of genesGreg Hather | Greg Hather | software | 28 Apr 2026 | 821 | 7 |
| MantelCorr Compute Mantel Cluster CorrelationsBrian Steinmeyer | Brian Steinmeyer | software | 28 Apr 2026 | 760 | 1 |
| maanova Tools for analyzing Micro Array experiments | no date on record | 541 | |||
| ppiStats Protein-Protein Interaction Statistical Package | no date on record | 540 | |||
| simpleaffy Very simple high level analysis of Affymetrix data | no date on record | 517 | |||
| pcot2 Principal Coordinates and Hotelling's T-Square method | no date on record | 486 | |||
| SAGx Statistical Analysis of the GeneChip | no date on record | 447 | |||
| splicegear splicegear | no date on record | 372 |