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Topic: Spatial or DifferentialExpression or ChipDb

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Release: Release 1.9 (2006)

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216 packages on Bioconductor tagged Spatial or DifferentialExpression or ChipDb, most distinct IPs first

Spatial, DifferentialExpression and ChipDb in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
multtest
Resampling-based multiple hypothesis testingKatherine S. Pollard		Katherine S. Pollardsoftware28 Apr 202614,45715
siggenes
Multiple Testing using SAM and Efron's Empirical Bayes ApproachesHolger Schwender		Holger Schwendersoftware28 Apr 20264,90117
hgu133plus2.db
Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record4,22743
oligo
Preprocessing tools for oligonucleotide arraysBenilton Carvalho		Benilton Carvalhosoftware28 Apr 20264,08752
globaltest
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set TestingJelle Goeman		Jelle Goemansoftware28 Apr 20262,84250
ROC
utilities for ROC, with microarray focusVince Carey		Vince Careysoftware28 Apr 20262,15910
GlobalAncova
Global test for groups of variables via model comparisonsManuela Hummel		Manuela Hummelsoftware28 Apr 20262,06270
hgu133a.db
Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,99643
hgu95av2.db
Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,60543
safe
Significance Analysis of Function and ExpressionLudwig Geistlinger		Ludwig Geistlingersoftware3 May 20261,59543
hugene10sttranscriptcluster.db
Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster)Biocore Package Maintainer		Biocore Package Maintainerannotationno date on record1,30243
EBarrays
Unified Approach for Simultaneous Gene Clustering and Differential Expression IdentificationMing Yuan		Ming Yuansoftware28 Apr 20261,28411
illuminaHumanv4.db
Illumina HumanHT12v4 annotation data (chip illuminaHumanv4)Mark Dunning		Mark Dunningannotationno date on record1,27443
affylmGUI
GUI for limma Package with Affymetrix MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,19455
limmaGUI
GUI for limma Package With Two Color MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,16511
RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysisFrancesco Del Carratore		Francesco Del Carratoresoftware28 Apr 20261,1426
OCplus
Operating characteristics plus sample size and local fdr for microarray experimentsAlexander Ploner		Alexander Plonersoftware28 Apr 20261,12920
timecourse
Statistical Analysis for Developmental Microarray Time Course DataYu Chuan Tai		Yu Chuan Taisoftware28 Apr 20261,11112
mouse4302.db
Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,05843
plgem
Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)Norman Pavelka		Norman Pavelkasoftware28 Apr 20261,0479
twilight
Estimation of local false discovery rateStefanie Senger		Stefanie Sengersoftware28 Apr 20261,0189
webbioc
Bioconductor Web InterfaceColin A. Smith		Colin A. Smithsoftware28 Apr 202699176
daMA
Efficient design and analysis of factorial two-colour microarray dataJobst Landgrebe		Jobst Landgrebesoftware28 Apr 20269396
factDesign
Factorial designed microarray experiment analysisDenise Scholtens		Denise Scholtenssoftware28 Apr 20269367
HEM
Heterogeneous error model for identification of differentially expressed genes under multiple conditionsHyungJun Cho		HyungJun Chosoftware28 Apr 20269328
OrderedList
Similarities of Ordered Gene ListsClaudio Lottaz		Claudio Lottazsoftware28 Apr 202690810
hgu219.db
Affymetrix Human Genome 219 Plate annotation data (chip hgu219)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record87943
copa
Functions to perform cancer outlier profile analysis.James W. MacDonald		James W. MacDonaldsoftware28 Apr 20268717
LPE
Methods for analyzing microarray data using Local Pooled Error (LPE) methodNitin Jain		Nitin Jainsoftware28 Apr 20268551