OrderedList
Bioc currentSimilarities of Ordered Gene Lists
Release Lineage
Entered 1.8 · Apr 27, 2006
Current · Requires R 4.6
Description
Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
22 22 exported
Complexity
6.5 avg / 35 max
Call network
22 nodes / 13 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,384
Files
30
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
22
Internal functions
0
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6.1
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
41
First release
2006-04-25
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
5
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 86%
- Documented parameters
- 87%
- Return-value docs
- 100%
- References docs
- 57%
Topics
People
Claudio Lottaz