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Release: Release 3.3 (2016)

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38 packages on Bioconductor, most distinct IPs first

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202630,33728
MultiDataSet
Implementation of MultiDataSet and ResultSetXavier Escrib		Xavier Escribsoftware28 Apr 20262,83349
CNEr
CNE Detection and VisualizationBoris Lenhard		Boris Lenhardsoftware28 Apr 20262,692112
ggcyto
Visualize Cytometry data with ggplotMike Jiang		Mike Jiangsoftware28 Apr 20262,08565
viper
Virtual Inference of Protein-activity by Enriched Regulon analysisMariano J Alvarez		Mariano J Alvarezsoftware28 Apr 20262,06087
MotifDb
An Annotated Collection of Protein-DNA Binding Sequence MotifsPaul Shannon		Paul Shannonsoftware28 Apr 20261,94459
SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbationsAdi Laurentiu Tarca		Adi Laurentiu Tarcasoftware28 Apr 20261,83915
DMRcate
Methylation array and sequencing spatial analysis methodsTim Peters		Tim Peterssoftware3 May 20261,838224
Cardinal
A mass spectrometry imaging toolbox for statistical analysisKylie Ariel Bemis		Kylie Ariel Bemissoftware28 Apr 20261,40531
Rbowtie
R bowtie wrapperMichael Stadler		Michael Stadlersoftware28 Apr 20261,2111
RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysisFrancesco Del Carratore		Francesco Del Carratoresoftware28 Apr 20261,1426
Rcpi
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug DiscoveryNan Xiao		Nan Xiaosoftware28 Apr 202698957
miRcomp
Tools to assess and compare miRNA expression estimatation methodsMatthew N. McCall		Matthew N. McCallsoftware28 Apr 20269779
CRISPRseek
Design of guide RNAs in CRISPR genome-editing systemsLihua Julie Zhu		Lihua Julie Zhusoftware28 Apr 2026952141
sevenbridges
Seven Bridges Platform API Client and Common Workflow Language Tool Builder in RPhil Webster		Phil Webstersoftware28 Apr 202688331
genArise
Microarray Analysis toolIFC Development Team		IFC Development Teamsoftware28 Apr 202679911
OncoScore
A tool to identify potentially oncogenic genesLuca De Sano		Luca De Sanosoftware28 Apr 202676662
diggit
Inference of Genetic Variants Driving Cellular PhenotypesMariano J Alvarez		Mariano J Alvarezsoftware28 Apr 202672596
GeneticsPed
Pedigree and genetic relationship functionsDavid Henderson		David Hendersonsoftware28 Apr 202668411
GraphAlignment
GraphAlignmentJoern P. Meier		Joern P. Meiersoftware28 Apr 20266840
LedPred
Learning from DNA to Predict EnhancersAitor Gonzalez		Aitor Gonzalezsoftware28 Apr 202661963
metagene
A package to produce metagene plots		no date on record613
DeMAND
DeMANDJung Hoon Woo		Jung Hoon Woosoftware28 Apr 20265463
IMPCdata
Retrieves data from IMPC databaseJeremy Mason		Jeremy Masonsoftware28 Apr 20265431
PhenStat
Statistical analysis of phenotypic data		no date on record502
BiGGR
Constraint based modeling in R using metabolic reconstruction databases		no date on record433
EGSEAdata
Gene set collections for the EGSEA packageMonther Alhamdoosh		Monther Alhamdooshexperiment5 May 20263360
genotypeeval
QA/QC of a gVCF or VCF file		no date on record324
rTANDEM
Interfaces the tandem protein identification algorithm in R		no date on record319
miRcompData
Data used in the miRcomp packageMatthew N. McCall		Matthew N. McCallexperiment5 May 20263081