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Release: Release 3.1 (2015)

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24 packages on Bioconductor, most distinct IPs first

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202630,33728
CNEr
CNE Detection and VisualizationBoris Lenhard		Boris Lenhardsoftware28 Apr 20262,692112
viper
Virtual Inference of Protein-activity by Enriched Regulon analysisMariano J Alvarez		Mariano J Alvarezsoftware28 Apr 20262,06087
MotifDb
An Annotated Collection of Protein-DNA Binding Sequence MotifsPaul Shannon		Paul Shannonsoftware28 Apr 20261,94459
SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbationsAdi Laurentiu Tarca		Adi Laurentiu Tarcasoftware28 Apr 20261,83915
DMRcate
Methylation array and sequencing spatial analysis methodsTim Peters		Tim Peterssoftware3 May 20261,838224
Cardinal
A mass spectrometry imaging toolbox for statistical analysisKylie Ariel Bemis		Kylie Ariel Bemissoftware28 Apr 20261,40531
Rbowtie
R bowtie wrapperMichael Stadler		Michael Stadlersoftware28 Apr 20261,2111
RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysisFrancesco Del Carratore		Francesco Del Carratoresoftware28 Apr 20261,1426
Rcpi
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug DiscoveryNan Xiao		Nan Xiaosoftware28 Apr 202698957
CRISPRseek
Design of guide RNAs in CRISPR genome-editing systemsLihua Julie Zhu		Lihua Julie Zhusoftware28 Apr 2026952141
genArise
Microarray Analysis toolIFC Development Team		IFC Development Teamsoftware28 Apr 202679911
diggit
Inference of Genetic Variants Driving Cellular PhenotypesMariano J Alvarez		Mariano J Alvarezsoftware28 Apr 202672596
GeneticsPed
Pedigree and genetic relationship functionsDavid Henderson		David Hendersonsoftware28 Apr 202668411
GraphAlignment
GraphAlignmentJoern P. Meier		Joern P. Meiersoftware28 Apr 20266840
metagene
A package to produce metagene plots		no date on record613
DeMAND
DeMANDJung Hoon Woo		Jung Hoon Woosoftware28 Apr 20265463
IMPCdata
Retrieves data from IMPC databaseJeremy Mason		Jeremy Masonsoftware28 Apr 20265431
PhenStat
Statistical analysis of phenotypic data		no date on record502
BiGGR
Constraint based modeling in R using metabolic reconstruction databases		no date on record433
rTANDEM
Interfaces the tandem protein identification algorithm in R		no date on record319
ELBOW
ELBOW - Evaluating foLd change By the lOgit Way		no date on record290
clonotypeR
High throughput analysis of T cell antigen receptor sequences		no date on record284
GoogleGenomics
R Client for Google Genomics API		no date on record180