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Topic: RNASeq or Homo_sapiens or Sequencing

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55 packages on Bioconductor tagged RNASeq or Homo_sapiens or Sequencing, most distinct IPs first

RNASeq, Homo_sapiens and Sequencing in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC dataTiago Chedraoui Silva		Tiago Chedraoui Silvasoftware28 Apr 20266,750103
TxDb.Hsapiens.UCSC.hg19.knownGene
Annotation package for TxDb object(s)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record6,25875
tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysisMichael Love		Michael Lovesoftware28 Apr 20265,8043
txdbmaker
Tools for making TxDb objects from genomic annotationsH. Pagès		H. Pagèssoftware28 Apr 20265,54697
TxDb.Hsapiens.UCSC.hg38.knownGene
Annotation package for TxDb object(s)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record3,91975
topGO
Enrichment Analysis for Gene OntologyFederico Marini		Federico Marinisoftware28 Apr 20263,22848
tximeta
Transcript Quantification Import with Automatic MetadataMichael Love		Michael Lovesoftware26 Oct 20262,485108
tradeSeq
trajectory-based differential expression analysis for sequencing dataHector Roux de Bezieux		Hector Roux de Bezieuxsoftware28 Apr 20262,46073
TCseq
Time course sequencing data analysisMengjun Wu		Mengjun Wusoftware28 Apr 20261,18172
tricycle
tricycle: Transferable Representation and Inference of cell cycleShijie Zheng		Shijie Zhengsoftware28 Apr 20261,163111
TCC
TCC: Differential expression analysis for tag count data with robust normalization strategiesJianqiang Sun		Jianqiang Sunsoftware28 Apr 20261,15864
traseR
GWAS trait-associated SNP enrichment analyses in genomic intervalsli chen		li chensoftware28 Apr 20261,14759
TFEA.ChIP
TFEA.ChIP, a Tool Kit for Transcription Factor EnrichmentYosra Berrouayel		Yosra Berrouayelsoftware28 Apr 20261,105106
tidybulk
Brings transcriptomics to the tidyverseStefano Mangiola		Stefano Mangiolasoftware28 Apr 20261,08591
transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and QuantificationArmen R. Karapetyan		Armen R. Karapetyansoftware28 Apr 20261,018148
TEQC
Quality control for target capture experimentsSarah Bonnin		Sarah Bonninsoftware28 Apr 20261,00031
transcriptogramer
Transcriptional analysis based on transcriptogramsDiego Morais		Diego Moraissoftware28 Apr 202699390
TissueEnrich
Tissue-specific gene enrichment analysisAshish Jain		Ashish Jainsoftware28 Apr 202698178
tidySingleCellExperiment
Brings SingleCellExperiment to the TidyverseStefano Mangiola		Stefano Mangiolasoftware28 Apr 202697992
tracktables
Build IGV tracks and HTML reportsTom Carroll		Tom Carrollsoftware28 Apr 202697045
TFHAZ
Transcription Factor High Accumulation ZonesGaia Ceddia		Gaia Ceddiasoftware28 Apr 2026942135
TVTB
TVTB: The VCF Tool BoxKevin Rue-Albrecht		Kevin Rue-Albrechtsoftware28 Apr 2026899159
topconfects
Top Confident Effect SizesPaul Harrison		Paul Harrisonsoftware28 Apr 202686125
tweeDEseq
RNA-seq data analysis using the Poisson-Tweedie family of distributionsDolors Pelegri-Siso		Dolors Pelegri-Sisosoftware28 Apr 202686023
TAPseq
Targeted scRNA-seq primer design for TAP-seqAndreas R. Gschwind		Andreas R. Gschwindsoftware28 Apr 202685589
TxDb.Hsapiens.UCSC.hg18.knownGene
Annotation package for TxDb object(s)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record83875
tidySummarizedExperiment
Brings SummarizedExperiment to the TidyverseStefano Mangiola		Stefano Mangiolasoftware28 Apr 202682992
TargetScore
TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence informationYue Li		Yue Lisoftware28 Apr 20268119
Trendy
Breakpoint analysis of time-course expression dataRhonda Bacher		Rhonda Bachersoftware28 Apr 202679890
tripr
T-cell Receptor/Immunoglobulin Profiler (TRIP)Nikolaos Pechlivanis		Nikolaos Pechlivanissoftware28 Apr 2026740100