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Release: Release 3.6 (2017)

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122 packages on Bioconductor, most distinct IPs first

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
treeio
Base Classes and Functions for Phylogenetic Tree Input and OutputGuangchuang Yu		Guangchuang Yusoftware30 Apr 202631,96639
TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC dataTiago Chedraoui Silva		Tiago Chedraoui Silvasoftware28 Apr 20266,750103
TxDb.Hsapiens.UCSC.hg19.knownGene
Annotation package for TxDb object(s)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record6,25875
tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysisMichael Love		Michael Lovesoftware28 Apr 20265,8043
TFBSTools
Software Package for Transcription Factor Binding Site (TFBS) AnalysisGe Tan		Ge Tansoftware28 Apr 20264,72179
TxDb.Hsapiens.UCSC.hg38.knownGene
Annotation package for TxDb object(s)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record3,91975
topGO
Enrichment Analysis for Gene OntologyFederico Marini		Federico Marinisoftware28 Apr 20263,22848
tkWidgets
R based tk widgetsJ. Zhang		J. Zhangsoftware28 Apr 20262,7636
TxDb.Mmusculus.UCSC.mm10.knownGene
Annotation package for TxDb object(s)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record2,19275
trackViewer
A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics dataJianhong Ou		Jianhong Ousoftware28 Apr 20261,713160
TSCAN
Tools for Single-Cell AnalysisZhicheng Ji		Zhicheng Jisoftware28 Apr 20261,37082
tximportData
tximportDataMichael Love		Michael Loveexperiment5 May 20261,3300
tilingArray
Transcript mapping with high-density oligonucleotide tiling arraysZhenyu Xu		Zhenyu Xusoftware28 Apr 20261,24974
TPP
Analyze thermal proteome profiling (TPP) experimentsDorothee Childs		Dorothee Childssoftware14 Sep 20261,22186
TCseq
Time course sequencing data analysisMengjun Wu		Mengjun Wusoftware28 Apr 20261,18172
TxDb.Dmelanogaster.UCSC.dm3.ensGene
Annotation package for TxDb object(s)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,16175
TCC
TCC: Differential expression analysis for tag count data with robust normalization strategiesJianqiang Sun		Jianqiang Sunsoftware28 Apr 20261,15864
traseR
GWAS trait-associated SNP enrichment analyses in genomic intervalsli chen		li chensoftware28 Apr 20261,14759
timecourse
Statistical Analysis for Developmental Microarray Time Course DataYu Chuan Tai		Yu Chuan Taisoftware28 Apr 20261,11112
TRONCO
TRONCO, an R package for TRanslational ONCOlogyLuca De Sano		Luca De Sanosoftware28 Apr 20261,02547
triplex
Search and visualize intramolecular triplex-forming sequences in DNAJiri Hon		Jiri Honsoftware28 Apr 20261,02217
transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and QuantificationArmen R. Karapetyan		Armen R. Karapetyansoftware28 Apr 20261,018148
twilight
Estimation of local false discovery rateStefanie Senger		Stefanie Sengersoftware28 Apr 20261,0189
tigre
Transcription factor Inference through Gaussian process Reconstruction of ExpressionAntti Honkela		Antti Honkelasoftware28 Apr 20261,01350
TurboNorm
A fast scatterplot smoother suitable for microarray normalizationMaarten van Iterson		Maarten van Itersonsoftware28 Apr 20261,00618
TEQC
Quality control for target capture experimentsSarah Bonnin		Sarah Bonninsoftware28 Apr 20261,00031
transcriptogramer
Transcriptional analysis based on transcriptogramsDiego Morais		Diego Moraissoftware28 Apr 202699390
TIN
Transcriptome instability analysisBjarne Johannessen		Bjarne Johannessensoftware28 Apr 202697399
tracktables
Build IGV tracks and HTML reportsTom Carroll		Tom Carrollsoftware28 Apr 202697045
tRanslatome
Comparison between multiple levels of gene expressionToma Tebaldi		Toma Tebaldisoftware28 Apr 2026956110