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Topic: GraphAndNetwork or Network or Microarray

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40 packages on Bioconductor tagged GraphAndNetwork or Network or Microarray, most distinct IPs first

GraphAndNetwork, Network and Microarray in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
sva
Surrogate Variable AnalysisJeffrey T. Leek		Jeffrey T. Leeksoftware5 May 202610,80468
siggenes
Multiple Testing using SAM and Efron's Empirical Bayes ApproachesHolger Schwender		Holger Schwendersoftware28 Apr 20264,90117
STRINGdb
STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment AnalysisDamian Szklarczyk		Damian Szklarczyksoftware27 Oct 20264,45949
snpStats
SnpMatrix and XSnpMatrix classes and methodsDavid Clayton		David Claytonsoftware28 Apr 20263,48812
SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbationsAdi Laurentiu Tarca		Adi Laurentiu Tarcasoftware28 Apr 20261,83915
sesame
SEnsible Step-wise Analysis of DNA MEthylation BeadChipsWanding Zhou		Wanding Zhousoftware30 Jun 20261,658112
shinyMethyl
Interactive visualization for Illumina methylation arraysJean-Philippe Fortin		Jean-Philippe Fortinsoftware28 Apr 20261,111159
SCAN.UPC
Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)Stephen R. Piccolo		Stephen R. Piccolosoftware28 Apr 20261,026114
SMITE
Significance-based Modules Integrating the Transcriptome and EpigenomeNeil Ari Wijetunga		Neil Ari Wijetungasoftware28 Apr 2026976151
SANTA
Spatial Analysis of Network AssociationsAlex Cornish		Alex Cornishsoftware28 Apr 202694417
SpeCond
Condition specific detection from expression dataFlorence Cavalli		Florence Cavallisoftware28 Apr 202690118
SingleCellSignalR
Cell Signalling Using Single-Cell RNA-seq or Proteomics DataJean-Philippe Villemin		Jean-Philippe Villeminsoftware28 Apr 2026900203
SIM
Integrated Analysis on two human genomic datasetsRenee X. de Menezes		Renee X. de Menezessoftware28 Apr 202686556
sigFeature
sigFeature: Significant feature selection using SVM-RFE & t-statisticPijush Das Developer		Pijush Das Developersoftware28 Apr 202686564
spkTools
Methods for Spike-in ArraysMatthew N McCall		Matthew N McCallsoftware28 Apr 202685910
sincell
R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq dataMiguel Julia		Miguel Juliasoftware6 May 202685451
SBMLR
SBML-R Interface and Analysis ToolsTomas Radivoyevitch		Tomas Radivoyevitchsoftware28 Apr 20268347
skewr
Visualize Intensities Produced by Illumina's Human Methylation 450k BeadChipRyan Putney		Ryan Putneysoftware28 Apr 2026829176
splineTimeR
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstructionHerbert Braselmann		Herbert Braselmannsoftware28 Apr 202681661
stepNorm
Stepwise normalization functions for cDNA microarraysYuanyuan Xiao		Yuanyuan Xiaosoftware28 Apr 20268039
SBGNview
"SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"Weijun Luo		Weijun Luosoftware28 Apr 202679285
scPCA
Sparse Contrastive Principal Component AnalysisPhilippe Boileau		Philippe Boileausoftware28 Apr 202678570
ssize
Estimate Microarray Sample SizeGregory R. Warnes		Gregory R. Warnessoftware28 Apr 20267856
snm
Supervised Normalization of MicroarraysJohn D. Storey		John D. Storeysoftware28 Apr 202678123
syntenet
Inference And Analysis Of Synteny NetworksFabrício Almeida-Silva		Fabrício Almeida-Silvasoftware28 Apr 202678076
SPEM
S-system parameter estimation methodXinyi YANG		Xinyi YANGsoftware28 Apr 202677421
spikeLI
Affymetrix Spike-in Langmuir Isotherm Data Analysis ToolEnrico Carlon		Enrico Carlonsoftware28 Apr 20267504
spqn
Spatial quantile normalizationYi Wang		Yi Wangsoftware28 Apr 202674943
sizepower
Sample Size and Power Calculation in Micorarray StudiesWeiliang Qiu		Weiliang Qiusoftware28 Apr 20267391
shinyepico
ShinyÉPICoOctavio Morante-Palacios		Octavio Morante-Palaciossoftware28 Apr 2026727208