SIM
Bioc currentIntegrated Analysis on two human genomic datasets
Release Lineage
Entered 2.3 · Oct 22, 2008
Current · Requires R 4.6
Description
Finds associations between two human genomic datasets.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
36 15 exported
Complexity
6.5 avg / 21 max
Call network
36 nodes / 36 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
8,153
Files
74
Compiled share
0.5%
Has compiled src
Yes
Language breakdown
API
Exported functions
15
Internal functions
20
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
33.3%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
36
First release
2008-10-21
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
7
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 97%
- Return-value docs
- 93%
- References docs
- 35%
Topics
People
Renee X. de Menezes
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("SIM")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.