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Topic: AffymetrixChip or Proteomics or Genetics

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55 packages on Bioconductor tagged AffymetrixChip or Proteomics or Genetics, most distinct IPs first

AffymetrixChip, Proteomics and Genetics in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
SummarizedExperiment
A container (S4 class) for matrix-like assaysHervé Pagès		Hervé Pagèssoftware28 Apr 202653,48424
Spectra
Spectra Infrastructure for Mass Spectrometry DataRforMassSpectrometry Package Maintainer		RforMassSpectrometry Package Maintainersoftware9 Jun 20264,46530
SNPRelate
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP DataXiuwen Zheng		Xiuwen Zhengsoftware28 Apr 20262,8103
systemPipeR
systemPipeR: A Multipurpose Workflow Management System for Reproducible Data AnalysisThomas Girke		Thomas Girkesoftware28 Apr 20262,50694
SeqArray
Data management of large-scale whole-genome sequence variant calls using GDS filesXiuwen Zheng		Xiuwen Zhengsoftware31 May 20261,95519
SeqVarTools
Tools for variant dataStephanie M. Gogarten		Stephanie M. Gogartensoftware12 Jul 20261,42089
SplicingGraphs
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to themH. Pagès		H. Pagèssoftware28 Apr 20261,16279
sangeranalyseR
sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in RKuan-Hao Chao		Kuan-Hao Chaosoftware28 Apr 2026943116
statTarget
Statistical Analysis of Molecular ProfilesHemi Luan		Hemi Luansoftware28 Apr 202690526
SingleCellSignalR
Cell Signalling Using Single-Cell RNA-seq or Proteomics DataJean-Philippe Villemin		Jean-Philippe Villeminsoftware28 Apr 2026900203
specL
specL - Prepare Peptide Spectrum Matches for Use in Targeted ProteomicsChristian Panse		Christian Pansesoftware28 Apr 202689832
similaRpeak
Metrics to estimate a level of similarity between two ChIP-Seq profilesAstrid Deschênes		Astrid Deschênessoftware28 Apr 20268962
StructuralVariantAnnotation
Variant annotations for structural variantsDaniel Cameron		Daniel Cameronsoftware28 Apr 202688590
scp
Mass Spectrometry-Based Single-Cell Proteomics Data AnalysisChristophe Vanderaa		Christophe Vanderaasoftware28 Apr 2026869108
ssviz
A small RNA-seq visualizer and analysis toolkitDiana Low		Diana Lowsoftware28 Apr 202682249
scoreInvHap
Get inversion status in predefined regionsDolors Pelegri-Siso		Dolors Pelegri-Sisosoftware28 Apr 202681180
sscu
Strength of Selected Codon UsageYu Sun		Yu Sunsoftware28 Apr 202679726
SWATH2stats
Transform and Filter SWATH Data for Statistical PackagesPeter Blattmann		Peter Blattmannsoftware28 Apr 202679476
SBGNview
"SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"Weijun Luo		Weijun Luosoftware28 Apr 202679285
SubCellBarCode
SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteomeTaner Arslan		Taner Arslansoftware28 Apr 2026758133
svaRetro
Retrotransposed transcript detection from structural variantsRuining Dong		Ruining Dongsoftware28 Apr 202673391
SynExtend
Tools for Comparative GenomicsNicholas Cooley		Nicholas Cooleysoftware28 Apr 202671332
SpatialOmicsOverlay
Spatial Overlay for Omic Data from Nanostring GeoMx DataMaddy Griswold		Maddy Griswoldsoftware28 Apr 2026705159
SAIGEgds
Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association StudiesXiuwen Zheng		Xiuwen Zhengsoftware28 Apr 202670138
svaNUMT
NUMT detection from structural variant callsRuining Dong		Ruining Dongsoftware28 Apr 202669091
SDAMS
Differential Abundant/Expression Analysis for Metabolomics, Proteomics and single-cell RNA sequencing DataYuntong Li		Yuntong Lisoftware28 Apr 202668951
scMET
Bayesian modelling of cell-to-cell DNA methylation heterogeneityAndreas C. Kapourani		Andreas C. Kapouranisoftware28 Apr 2026687107
SNPlocs.Hsapiens.dbSNP144.GRCh38
SNP locations for Homo sapiens (dbSNP Build 144)H. Pagès		H. Pagèsannotationno date on record64460
semisup
Semi-Supervised Mixture ModelArmin Rauschenberger		Armin Rauschenbergersoftware28 Apr 20266125
SMAD
Statistical Modelling of AP-MS Data (SMAD)Qingzhou Zhang		Qingzhou Zhangsoftware28 Apr 202659330