similaRpeak
Bioc currentMetrics to estimate a level of similarity between two ChIP-Seq profiles
Release Lineage
Entered 3.1 · Apr 17, 2015
Current · Requires R 4.6
Description
This package calculates metrics which quantify the level of similarity between ChIP-Seq profiles. More specifically, the package implements six pseudometrics specialized in pattern similarity detection in ChIP-Seq profiles.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
6 1 exported
Complexity
9.7 avg / 33 max
Call network
6 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,865
Files
37
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
2
Internal functions
5
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
50%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
23
First release
2015-04-16
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 17includes a package overview page
- Examples that run
- 100%4 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 12%
Repository practices
4 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/adeschen/similarpeak on 2026-10-21.
The R CMD check workflow runs on Linux, macOS and Windows
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| chr7Profiles | list | 1 element | No other package |
| demoProfiles | list | 4 elements | No other package |
Topics
Suggested by (1)
People
- Astrid Deschênes maintainer author
- Pascal Belleau author
- Elsa Bernatchez author
- Arnaud Droit author
- Charles Joly Beauparlant author
- Fabien Claude Lamaze author
- Rawane Samb author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("similaRpeak")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.