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Topic: AnnotationData or BSgenome or Infrastructure

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221 packages on Bioconductor tagged AnnotationData or BSgenome or Infrastructure, most distinct IPs first

AnnotationData, BSgenome and Infrastructure in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
preprocessCore
A collection of pre-processing functionsBen Bolstad		Ben Bolstadsoftware28 Apr 202619,0201
ProtGenerics
Generic infrastructure for Bioconductor mass spectrometry packagesLaurent Gatto		Laurent Gattosoftware28 Apr 202613,0181
PSMatch
Handling and Managing Peptide Spectrum MatchesLaurent Gatto		Laurent Gattosoftware28 Apr 20263,831112
plyranges
A fluent interface for manipulating GenomicRangesMichael Love		Michael Lovesoftware28 Apr 20261,93070
puma
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)Xuejun Liu		Xuejun Liusoftware28 Apr 20261,29655
pcaExplorer
Interactive Visualization of RNA-seq Data Using a Principal Components ApproachFederico Marini		Federico Marinisoftware28 Apr 20261,192230
pdInfoBuilder
Platform Design Information Package BuilderBenilton Carvalho		Benilton Carvalhosoftware28 Apr 20261,17553
podkat
Position-Dependent Kernel Association TestUlrich Bodenhofer		Ulrich Bodenhofersoftware28 Apr 20261,14359
psichomics
Graphical Interface for Alternative Splicing Quantification, Analysis and VisualisationNuno Saraiva-Agostinho		Nuno Saraiva-Agostinhosoftware31 May 20261,070205
panp
Presence-Absence Calls from Negative Strand Matching ProbesetsPeter Warren		Peter Warrensoftware28 Apr 20261,06612
PFAM.db
A set of protein ID mappings for PFAMBioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,03842
phantasus
Visual and interactive gene expression analysisAlexey Sergushichev		Alexey Sergushichevsoftware28 Apr 2026992160
pRolocGUI
Interactive visualisation of spatial proteomics dataLisa Breckels		Lisa Breckelssoftware28 Apr 2026976244
profileplyr
Visualization and annotation of read signal over genomic ranges with profileplyrDoug Barrows		Doug Barrowssoftware7 Jun 2026919203
Prostar
Provides a GUI for DAPARSamuel Wieczorek		Samuel Wieczoreksoftware28 Apr 2026880176
periodicDNA
Set of tools to identify periodic occurrences of k-mers in DNA sequencesJacques Serizay		Jacques Serizaysoftware28 Apr 202686776
pipeComp
pipeComp pipeline benchmarking frameworkPierre-Luc Germain		Pierre-Luc Germainsoftware26 May 2026852210
ProteoDisco
Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequencesJob van Riet		Job van Rietsoftware28 Apr 202677599
pipeFrame
Pipeline framework for bioinformatics in RZheng Wei		Zheng Weisoftware28 Apr 202674682
PhyloProfile
PhyloProfileVinh Tran		Vinh Transoftware14 Sep 2026743129
pd.hugene.1.0.st.v1
Platform Design Info for Affymetrix HuGene-1_0-st-v1Benilton Carvalho		Benilton Carvalhoannotationno date on record72653
PepsNMR
Pre-process 1H-NMR FID signalsManon Martin		Manon Martinsoftware28 Apr 202672437
pfamAnalyzeR
Identification of domain isotypes in pfam dataKristoffer Vitting-Seerup		Kristoffer Vitting-Seerupsoftware28 Apr 202670734
PhIPData
Container for PhIP-Seq ExperimentsAthena Chen		Athena Chensoftware28 Apr 202670664
plyinteractions
Extending tidy verbs to genomic interactionsJacques Serizay		Jacques Serizaysoftware28 Apr 202668273
plotGrouper
Shiny app GUI wrapper for ggplot with built-in statistical analysisJohn D. Gagnon		John D. Gagnonsoftware28 Apr 2026616141
Pedixplorer
Pedigree FunctionsLouis Le Nezet		Louis Le Nezetsoftware28 Apr 2026580102
pd.hg.u95av2
Platform Design Info for The Manufacturer's Name HG_U95Av2Benilton Carvalho		Benilton Carvalhoannotationno date on record56253
PolyPhen.Hsapiens.dbSNP131
PolyPhen Predictions for Homo sapiens dbSNP build 131Valerie Obenchain		Valerie Obenchainannotationno date on record56077
pd.hg.u133.plus.2
Platform Design Info for The Manufacturer's Name HG-U133_Plus_2Benilton Carvalho		Benilton Carvalhoannotationno date on record54653