Skip to content

PepsNMR

Bioc current

Pre-process 1H-NMR FID signals

v1.30.0 · software · GPL-2 | file LICENSE

Release Lineage

Entered 3.8 · Oct 31, 2018

Current · Requires R 4.6

1.0 In 16 of 49 releases 3.23

Description

This package provides R functions for common pre-procssing steps that are applied on 1H-NMR data. It also provides a function to read the FID signals directly in the Bruker format.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

39 22 exported

Complexity

10.2 avg / 36 max

Call network

39 nodes / 84 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

5,496

Files

74

Compiled share

0%

Has compiled src

No

Language breakdown

R 3,377 (61.4%)Docs 1,494 (27.2%)Vignettes 625 (11.4%)

API

Exported functions

22

Internal functions

17

Recent export changes

v3.9+1 ZeroFilling
v3.8+21 Apodization, BaselineCorrection, Bucketing +18 more

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

Yes

CI type

["github-actions"]

PR gated

Yes

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.6

System requirements

C++ standard

License

GPL-2 | file LICENSE

License flags

SPDX valid, not OSI

History

Versions

16

First release

2019-03-08

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

0

LOC over versions

v3.8: 5,274 LOCv3.9: 5,463 LOCv3.10: 5,463 LOCv3.11: 5,474 LOCv3.12: 5,495 LOCv3.13: 5,496 LOCv3.14: 5,496 LOCv3.15: 5,496 LOCv3.16: 5,496 LOCv3.17: 5,496 LOCv3.18: 5,496 LOCv3.19: 5,496 LOCv3.20: 5,496 LOCv3.21: 5,496 LOCv3.22: 5,496 LOCv3.23: 5,496 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 108 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
93%
Return-value docs
82%
References docs
65%

Topics

Depended on by (1)

Bioconductor (1)

People

Report a problem with this page →