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55 packages on Bioconductor tagged MassSpectrometry or ExperimentData or Software, most distinct IPs first

MassSpectrometry, ExperimentData and Software in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
ncdfFlow
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.Mike Jiang		Mike Jiangsoftware28 Apr 20262,52522
Nebulosa
Single-Cell Data Visualisation Using Kernel Gene-Weighted Density EstimationJose Alquicira-Hernandez		Jose Alquicira-Hernandezsoftware28 Apr 20262,00083
NOISeq
Exploratory analysis and differential expression for RNA-seq dataSonia Tarazona		Sonia Tarazonasoftware28 Apr 20261,32712
nucleR
Nucleosome positioning package for RAlba Sala		Alba Salasoftware28 Apr 20261,14576
NanoStringNCTools
NanoString nCounter ToolsMaddy Griswold		Maddy Griswoldsoftware28 Apr 20261,13677
NADfinder
Call wide peaks for sequencing dataJianhong Ou		Jianhong Ousoftware28 Apr 20261,122225
normr
Normalization and difference calling in ChIP-seq dataJohannes Helmuth		Johannes Helmuthsoftware21 May 20261,06483
NormalyzerDE
Evaluation of normalization methods and calculation of differential expression analysis statisticsJakob Willforss		Jakob Willforsssoftware28 Apr 2026951106
netresponse
Functional Network AnalysisLeo Lahti		Leo Lahtisoftware28 Apr 202693869
npGSEA
Permutation approximation methods for gene set enrichment analysis (non-permutation GSEA)Jessica Larson		Jessica Larsonsoftware28 Apr 202692347
NormqPCR
Functions for normalisation of RT-qPCR dataJames Perkins		James Perkinssoftware28 Apr 202690447
netSmooth
Network smoothing for scRNAseqJonathan Ronen		Jonathan Ronensoftware28 Apr 2026897170
nullranges
Generation of null ranges via bootstrapping or covariate matchingMichael Love		Michael Lovesoftware28 Apr 202685887
nnNorm
Spatial and intensity based normalization of cDNA microarray data based on robust neural netsAdi Laurentiu Tarca		Adi Laurentiu Tarcasoftware28 Apr 20268539
ngsReports
Load FastqQC reports and other NGS related filesStevie Pederson		Stevie Pedersonsoftware28 Apr 202684689
nethet
A bioconductor package for high-dimensional exploration of biological network heterogeneityNicolas Staedler		Nicolas Staedlersoftware28 Apr 202684574
nondetects
Non-detects in qPCR dataValeriia Sherina		Valeriia Sherinasoftware28 Apr 202684343
NuPoP
An R package for nucleosome positioning predictionJi-Ping Wang		Ji-Ping Wangsoftware28 Apr 20268322
normalize450K
Preprocessing of Illumina Infinium 450K dataJonathan Alexander Heiss		Jonathan Alexander Heisssoftware28 Apr 202682213
NanoMethViz
Visualise methylation data from Oxford Nanopore sequencingShian Su		Shian Susoftware28 Apr 2026818146
nnSVG
Scalable identification of spatially variable genes in spatially-resolved transcriptomics dataLukas M. Weber		Lukas M. Webersoftware16 Jul 202681679
nucleoSim
Generate synthetic nucleosome mapsAstrid Deschênes		Astrid Deschênessoftware28 Apr 20267789
NoRCE
NoRCE: Noncoding RNA Sets Cis Annotation and EnrichmentGulden Olgun		Gulden Olgunsoftware28 Apr 2026768118
NanoStringDiff
Differential Expression Analysis of NanoString nCounter Datatingting zhai		tingting zhaisoftware28 Apr 20267659
NetPathMiner
NetPathMiner for Biological Network Construction, Path Mining and VisualizationAhmed Mohamed		Ahmed Mohamedsoftware28 Apr 202675517
NPARC
Non-parametric analysis of response curves for thermal proteome profiling experimentsNils Kurzawa		Nils Kurzawasoftware28 Apr 202672838
NanoTube
An Easy Pipeline for NanoString nCounter Data AnalysisCaleb Class		Caleb Classsoftware28 Apr 202671346
ncGTW
Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment DetectionChiung-Ting Wu		Chiung-Ting Wusoftware28 Apr 2026712144
ncRNAtools
An R toolkit for non-coding RNALara Selles Vidal		Lara Selles Vidalsoftware23 Jul 202668539
NTW
Predict gene network using an Ordinary Differential Equation (ODE) based methodYuanhua Liu		Yuanhua Liusoftware28 Apr 20266833