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Topic: VariantAnnotation or Bayesian or Regression

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23 packages on Bioconductor tagged VariantAnnotation or Bayesian or Regression, most distinct IPs first

VariantAnnotation, Bayesian and Regression in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
glmGamPoi
Fit a Gamma-Poisson Generalized Linear ModelConstantin Ahlmann-Eltze		Constantin Ahlmann-Eltzesoftware28 Apr 20266,90446
GENIE3
GEne Network Inference with Ensemble of treesVan Anh Huynh-Thu		Van Anh Huynh-Thusoftware28 Apr 20262,15426
GlobalAncova
Global test for groups of variables via model comparisonsManuela Hummel		Manuela Hummelsoftware28 Apr 20261,88670
gCrisprTools
Suite of Functions for Pooled Crispr Screen QC and AnalysisRussell Bainer		Russell Bainersoftware28 Apr 202691281
gpls
Classification using generalized partial least squaresBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20268841
GRaNIE
GRaNIE: Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq dataChristian Arnold		Christian Arnoldsoftware28 Apr 2026825151
glmSparseNet
Network Centrality Metrics for Elastic-Net Regularized ModelsAndré Veríssimo		André Veríssimosoftware28 Apr 2026708180
GMRP
GWAS-based Mendelian Randomization and Path AnalysesYuan-De Tan		Yuan-De Tansoftware28 Apr 202667316
GmicR
Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC)Richard Virgen-Slane		Richard Virgen-Slanesoftware28 Apr 2026620148
geneAttribution
Identification of candidate genes associated with genetic variationArthur Wuster		Arthur Wustersoftware28 Apr 202661076
GenomicOZone
Delineate outstanding genomic zones of differential gene activityHua Zhong		Hua Zhongsoftware28 Apr 2026603155
gwasurvivr
gwasurvivr: an R package for genome wide survival analysisAbbas Rizvi		Abbas Rizvisoftware28 Apr 2026591143
gemma.R
A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analysesPaul Pavlidis		Paul Pavlidissoftware5 Oct 202659092
globalSeq
Global Test for CountsArmin Rauschenberger		Armin Rauschenbergersoftware28 Apr 20265690
GEM
GEM: fast association study for the interplay of Gene, Environment and MethylationHong Pan		Hong Pansoftware28 Apr 202655124
GWAS.BAYES
Bayesian analysis of Gaussian GWAS dataJacob Williams		Jacob Williamssoftware28 Apr 202654691
GRENITS
Gene Regulatory Network Inference Using Time SeriesEdward Morrissey		Edward Morrisseysoftware28 Apr 202653131
graper
Adaptive penalization in high-dimensional regression and classification with external covariates using variational BayesBritta Velten		Britta Veltensoftware28 Apr 202652030
gemini
GEMINI: Variational inference approach to infer genetic interactions from pairwise CRISPR screensSidharth Jain		Sidharth Jainsoftware28 Apr 202649682
GAprediction
Prediction of gestational age with Illumina HumanMethylation450 dataJon Bohlin		Jon Bohlinsoftware28 Apr 202647117
GIGSEA
Genotype Imputed Gene Set Enrichment AnalysisShijia Zhu		Shijia Zhusoftware28 Apr 202646611
GNET2
Constructing gene regulatory networks from expression data through functional module inferenceChen Chen		Chen Chensoftware31 Oct 202538794
granulator
Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq dataSabina Pfister		Sabina Pfistersoftwareno date on record204