granulator
Bioc currentRapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data
Release Lineage
Entered 3.13 · May 20, 2021
Current · Requires R 4.6
Description
granulator is an R package for the cell type deconvolution of heterogeneous tissues based on bulk RNA-seq data or single cell RNA-seq expression profiles. The package provides a unified testing interface to rapidly run and benchmark multiple state-of-the-art deconvolution methods. Data for the deconvolution of peripheral blood mononuclear cells (PBMCs) into individual immune cell types is provided as well.
None published for Bioconductor
Call graph
Open call graph →Code intelligence has not been computed for this package yet.
Code
Code metrics have not been computed for this package yet.
Repository practices
Checks run against github.com/xanibas/granulator on 2026-10-21.
No development-tooling practices detected in the upstream repository.
Topics
Suggested by (1)
People
- Sabina Pfister author maintainer
- Enrico Ferrero author
- Vincent Kuettel author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("granulator")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.