R Observatory
Menu
Search

Packages

Downloads

Distinct IPs a month

Licence

Licence family offered

Topic: DimensionReduction or CancerData or SingleCell

biocViews term

Category

People
AI tools

AI coding tool

AI tool found as

Model named in commits

Code

Source repository on GitHub known

Dates
First letter: D

First letter

Release

In the current release or not

Bioconductor release

Clear all

28 packages on Bioconductor tagged DimensionReduction or CancerData or SingleCell, most distinct IPs first

DimensionReduction, CancerData and SingleCell in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
DropletUtils
Utilities for Handling Single-Cell Droplet DataJonathan Griffiths		Jonathan Griffithssoftware27 Sep 20264,10759
dittoSeq
User Friendly Single-Cell and Bulk RNA Sequencing VisualizationDaniel Bunis		Daniel Bunissoftware28 Apr 20261,83155
decontX
Decontamination of single cell genomics dataJoshua Campbell		Joshua Campbellsoftware28 Apr 20261,213233
diffcyt
Differential discovery in high-dimensional cytometry via high-resolution clusteringLukas M. Weber		Lukas M. Webersoftware16 Jul 20261,152146
densvis
Density-Preserving Data Visualization via Non-Linear Dimensionality ReductionAlan O'Callaghan		Alan O'Callaghansoftware28 Apr 20261,15026
depmap
Cancer Dependency Map Data PackageLaurent Gatto		Laurent Gattoexperiment5 May 20261,00064
dreamlet
Scalable differential expression analysis of single cell transcriptomics datasets with complex study designsGabriel Hoffman		Gabriel Hoffmansoftware28 Apr 2026912195
DESpace
DESpace: a framework to discover spatially variable genes and differential spatial patterns across conditionsPeiying Cai		Peiying Caisoftware7 Oct 2026852122
distinct
distinct: a method for differential analyses via hierarchical permutation testsSimone Tiberi		Simone Tiberisoftware24 Sep 202684388
deconvR
Simulation and Deconvolution of Omic ProfilesIrem B. Gündüz		Irem B. Gündüzsoftware28 Apr 2026824184
DEsingle
DEsingle for detecting three types of differential expression in single-cell RNA-seq dataZhun Miao		Zhun Miaosoftware28 Apr 202677839
DepecheR
Determination of essential phenotypic elements of clusters in high-dimensional entitiesJakob Theorell		Jakob Theorellsoftware28 Apr 2026734104
Dino
Normalization of Single-Cell mRNA Sequencing DataJared Brown		Jared Brownsoftware28 Apr 2026696186
DifferentialRegulation
Differentially regulated genes from scRNA-seq dataSimone Tiberi		Simone Tiberisoftware28 Apr 202667768
DelayedTensor
R package for sparse and out-of-core arithmetic and decomposition of TensorKoki Tsuyuzaki		Koki Tsuyuzakisoftware28 Apr 202667453
demuxSNP
scRNAseq demultiplexing using cell hashing and SNPsMichael Lynch		Michael Lynchsoftware28 Apr 2026630107
demuxmix
Demultiplexing oligo-barcoded scRNA-seq data using regression mixture modelsHans-Ulrich Klein		Hans-Ulrich Kleinsoftware28 Apr 202662927
DeconvoBuddies
Helper Functions for LIBD DeconvolutionLouise Huuki-Myers		Louise Huuki-Myerssoftware28 Apr 2026600200
Dune
Improving replicability in single-cell RNA-Seq cell type discoveryHector Roux de Bezieux		Hector Roux de Bezieuxsoftware28 Apr 202658182
DLBCL
Diffuse large B-cell lymphoma expression dataMarcus Dittrich		Marcus Dittrichexperiment5 May 20265689
dominoSignal
Cell Communication Analysis for Single Cell RNA SequencingKavita Krishnan		Kavita Krishnansoftware28 Apr 2026556137
DCATS
Differential Composition Analysis Transformed by a Similarity matrixXinyi Lin		Xinyi Linsoftware28 Apr 202654224
dandelionR
Single-cell Immune Repertoire Trajectory Analysis in RKelvin Tuong		Kelvin Tuongsoftware28 Apr 2026430140
DOtools
Convenient functions to streamline your single cell data analysis workflowMariano Ruz Jurado		Mariano Ruz Juradosoftware28 Apr 2026425343
DOTSeq
Genome-wide Detection of Differential ORF UsageChun Shen Lim		Chun Shen Limsoftware28 Apr 2026418157
DenoIST
DenoIST: Denoising Image-based Spatial Transcriptomics dataAaron Kwok		Aaron Kwoksoftware28 Apr 202639473
drugfindR
Investigate iLINCS for candidate repurposable drugsAli Sajid Imami		Ali Sajid Imamisoftware28 Apr 202639044
DeSousa2013
Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesionXin Wang		Xin Wangexperiment5 May 2026304123