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Topic: RNASeq or Homo_sapiens or ExperimentData

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91 packages on Bioconductor tagged RNASeq or Homo_sapiens or ExperimentData, most distinct IPs first

RNASeq, Homo_sapiens and ExperimentData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
celldex
Index of Reference Cell Type DatasetsAaron Lun		Aaron Lunexperiment5 May 20265,71795
cn.mops
cn.mops - Mixture of Poissons for CNV detection in NGS dataGundula Povysil		Gundula Povysilsoftware28 Apr 20261,25630
clusterExperiment
Compare Clusterings for Single-Cell SequencingElizabeth Purdom		Elizabeth Purdomsoftware28 Apr 20261,150147
compcodeR
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methodsCharlotte Soneson		Charlotte Sonesonsoftware10 Sep 20261,10390
cqn
Conditional quantile normalizationKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20261,08716
countsimQC
Compare Characteristic Features of Count Data SetsCharlotte Soneson		Charlotte Sonesonsoftware28 Apr 2026990125
cTRAP
Identification of candidate causal perturbations from differential gene expression dataNuno Saraiva-Agostinho		Nuno Saraiva-Agostinhosoftware28 Apr 2026975154
CoGAPS
Coordinated Gene Activity in Pattern SetsElana J. Fertig		Elana J. Fertigsoftware28 Apr 202695994
CEMiTool
Co-expression Modules identification ToolHelder Nakaya		Helder Nakayasoftware20 Oct 2026950198
CONFESS
Cell OrderiNg by FluorEScence SignalDiana LOW		Diana LOWsoftware28 Apr 2026917152
curatedMetagenomicData
Curated Metagenomic Data of the Human MicrobiomeLucas schiffer		Lucas schifferexperiment5 May 2026913148
coseq
Co-Expression Analysis of Sequencing DataAndrea Rau		Andrea Rausoftware28 Apr 202691275
casper
Characterization of Alternative Splicing Based on Paired-End ReadsDavid Rossell		David Rossellsoftware28 Apr 2026910114
CeTF
Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysisCarlos Alberto Oliveira de Biagi Junior		Carlos Alberto Oliveira de Biagi Juniorsoftware28 Apr 2026895228
cellity
Quality Control for Single-Cell RNA-seq DataTomislav Ilicic		Tomislav Ilicicsoftware28 Apr 202686168
CoverageView
Coverage visualization package for RErnesto Lowy		Ernesto Lowysoftware28 Apr 202684957
CNVRanger
Summarization and expression/phenotype association of CNV rangesLudwig Geistlinger		Ludwig Geistlingersoftware9 Sep 202684575
customProDB
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics searchXiaojing Wang		Xiaojing Wangsoftware13 Jan 2026819103
ChAMPdata
Data Packages for ChAMP packageYuan Tian		Yuan Tianexperiment5 May 202681611
CHETAH
Fast and accurate scRNA-seq cell type identificationJurrian de Kanter		Jurrian de Kantersoftware28 Apr 2026800105
condiments
Differential Topology, Progression and DifferentiationHector Roux de Bezieux		Hector Roux de Bezieuxsoftware28 Apr 2026795150
ctsGE
Clustering of Time Series Gene Expression dataMichal Sharabi-Schwager		Michal Sharabi-Schwagersoftware28 Apr 202678761
cardelino
Clone Identification from Single Cell DataDavis McCarthy		Davis McCarthysoftware28 Apr 2026743147
CausalR
Causal network analysis methodsGlyn Bradley		Glyn Bradleysoftware28 Apr 202672217
CelliD
Unbiased Extraction of Single Cell gene signatures using Multiple Correspondence AnalysisAkira Cortal		Akira Cortalsoftware3 Nov 2025690190
covEB
Empirical Bayes estimate of block diagonal covariance matricesC. Pacini		C. Pacinisoftware28 Apr 202668324
consICA
consensus Independent Component AnalysisPetr V. Nazarov		Petr V. Nazarovsoftware28 Apr 202668387
consensus
Cross-platform consensus analysis of genomic measurements via interlaboratory testing methodTim Peters		Tim Peterssoftware28 Apr 202665812
ccImpute
ccImpute: an accurate and scalable consensus clustering based approach to impute dropout events in the single-cell RNA-seq data (https://doi.org/10.1186/s12859-022-04814-8)Marcin Malec		Marcin Malecsoftware28 Apr 202662240
CDI
Clustering Deviation Index (CDI)Jiyuan Fang		Jiyuan Fangsoftware28 Apr 2026621173