consensus
Bioc currentCross-platform consensus analysis of genomic measurements via interlaboratory testing method
Release Lineage
Entered 3.8 · Oct 31, 2018
Current · Requires R 4.6
Description
An implementation of the American Society for Testing and Materials (ASTM) Standard E691 for interlaboratory testing procedures, designed for cross-platform genomic measurements. Given three (3) or more genomic platforms or laboratory protocols, this package provides interlaboratory testing procedures giving per-locus comparisons for sensitivity and precision between platforms.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
8 5 exported
Complexity
2.5 avg / 6 max
Call network
8 nodes / 3 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
788
Files
35
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
5
Internal functions
3
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5
System requirements
–
C++ standard
–
License
BSD_3_clause + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
16
First release
2019-03-06
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 96%
- Return-value docs
- 100%
- References docs
- 46%
Topics
People
- Tim Peters maintainer author
- Benedetta Frida Baldi art
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("consensus")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.