R Observatory: Metrics for viruslearner version 0.0.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2024-04-21. Its history is shown below.

Reason: issues were not corrected in time

Details below reflect version 0.0.2, its last release before removal.

viruslearner

0.0.2

Ensemble Learning for HIV-Related Metrics

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Juan Pablo Acuña González2 releasesCRAN page ↗GitHub ↗

Advanced statistical modeling techniques for ensemble learning, specifically tailored to the analysis of lymphocyte counts and viral load data in the context of HIV research. Empowering researchers and practitioners, this tool provides a comprehensive solution for tasks such as analysis, prediction and risk calculation related to key viral metrics. The package incorporates cutting-edge ensemble learning principles, inspired by model stacking techniques of Simon P. Couch and Max Kuhn (2022) doi:10.21105/joss.04471 and adhering to tidy data principles, offering a robust and reproducible framework for HIV research.

Install

R (source archive)pak (dev)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/viruslearner/viruslearner_0.0.2.tar.gz"
pkgFile <- "viruslearner_0.0.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.0.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("juanv66x/viruslearner")

Development version from juanv66x/viruslearner. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-viruslearner

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-viruslearner

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.26

not tracked

Coverage

100%

Documentation · exports

13

Dependencies · direct

Documentation

READMEYes · 84 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on64 r2u12 autocran

Dependencies

Declared dependencies

31 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (13)

dials dplyr hardhat parsnip recipes rsample stacksstatstidyselect tune workflows workflowsets yardstick

LinkingTo (0)

none

Suggests (20)

baguette broom cowplot factoextra FactoMineR ggpubr kernlab kknn knitrnnetNeuralNetTools ranger rmarkdown rules testthat tidyverse vdiffr tidyr viraldomain vip

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Juan Pablo Acuña González

Author, Maintainer, Copyright holder

Authors (4)

Juan Pablo Acuña González

Author, Maintainer, Copyright holder

María de los Ángeles Salgado Jiménez

Author

Baltazar Joanico Morales

Author

Juan Villagómez Méndez

Author

Copyright holders (1)

Juan Pablo Acuña González

Author, Maintainer, Copyright holder

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.4.0 released · 2024-04-24
archivedRemoved from CRAN
2024-04-21
issues were not corrected in time
0.0.2
2024-04-03 · diff ↗
0.0.1
2024-01-31
R
R 4.3.0 released · 2023-04-21

Package metadata

Total releases: 2
License: MIT + file LICENSE OSI
Minimum R: ≥ 2.10
Bundled data: 61 KB / 7 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("viruslearner")

Format

Acuña González, J. P., Salgado Jiménez, M. d. l. Á., Joanico Morales, B., & Villagómez Méndez, J. (n.d.). viruslearner: Ensemble Learning for HIV-Related Metrics (Version 0.0.2) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=viruslearner

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for viruslearner version 0.0.2 [Data set]. HJJB, LLC. Data release v2026-08-11. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-11, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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