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ubiquity

PKPD, PBPK, and Systems Pharmacology Modeling Tools

v2.1.0 · Jan 7, 2025 · BSD_2_clause + file LICENSE

Description

Complete work flow for the analysis of pharmacokinetic pharmacodynamic (PKPD), physiologically-based pharmacokinetic (PBPK) and systems pharmacology models including: creation of ordinary differential equation-based models, pooled parameter estimation, individual/population based simulations, rule-based simulations for clinical trial design and modeling assays, deployment with a customizable 'Shiny' app, and non-compartmental analysis. System-specific analysis templates can be generated and each element includes integrated reporting with 'PowerPoint' and 'Word'.

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CRAN Check Status

3 NOTE
11 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (3 non-OK)
NOTE r-oldrel-macos-arm64

installed package size

installed size is  7.2Mb
  sub-directories of 1Mb or more:
    doc     4.5Mb
    ubinc   2.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  7.2Mb
  sub-directories of 1Mb or more:
    doc     4.5Mb
    ubinc   2.0Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  7.2Mb
  sub-directories of 1Mb or more:
    doc     4.5Mb
    ubinc   2.0Mb

Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  7.2Mb
  sub-directories of 1Mb or more:
    doc     4.5Mb
    ubinc   2.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  7.2Mb
  sub-directories of 1Mb or more:
    doc     4.5Mb
    ubinc   2.0Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  7.2Mb
  sub-directories of 1Mb or more:
    doc     4.5Mb
    ubinc   2.0Mb

Reverse Dependencies (1)

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Dependency Network

Dependencies Reverse dependencies cli deSolve dplyr digest doParallel flextable foreach ggplot2 knitr MASS onbrand optimx PKNCA pso readxl +5 more dependencies ruminate ubiquity

Version History

new 2.1.0 Mar 10, 2026
updated 2.1.0 ← 2.0.3 diff Jan 6, 2025
updated 2.0.3 ← 2.0.1 diff Mar 7, 2024
updated 2.0.1 ← 2.0.0 diff Oct 28, 2023
updated 2.0.0 ← 1.0.5 diff Sep 2, 2021
updated 1.0.5 ← 1.0.4 diff Apr 24, 2021
updated 1.0.4 ← 1.0.3 diff Apr 17, 2021
updated 1.0.3 ← 1.0.2 diff Sep 12, 2020
updated 1.0.2 ← 1.0.1 diff Jul 4, 2020
updated 1.0.1 ← 1.0.0 diff Jan 20, 2020
new 1.0.0 Oct 16, 2019