R Observatory: Metrics for tidyseurat version 0.8.10

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

tidyseurat

0.8.10Package record

Brings Seurat to the Tidyverse

0packages depend

7.4Kdownloads / year

83.7%test coverage

13/13flavors OK

Overview

About

Maintained by Stefano MangiolaCRAN page ↗GitHub ↗Website ↗Issues ↗

It creates an invisible layer that allow to see the 'Seurat' object as tibble and interact seamlessly with the tidyverse.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("tidyseurat", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("stemangiola/tidyseurat")

Development version from stemangiola/tidyseurat. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-tidyseurat

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-tidyseurat

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-tidyseurat

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 7.2 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-09-09
ERROR12 OK, 1 ERROR2026-09-04
OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09

Show 4 earlier changesHide 4 earlier changes

ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-04-10
ERROR13 OK, 1 ERROR2026-04-09
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.8.10

READMEYes · 1,194 wordsVignettesYes · 2 · dynamicNEWSNoCitation fileYes · cites a publicationWebsiteYes · pkgdown

Help pages: 44 (6 internal)
Examples that run: 95%35 run in a plain check · 2 hold no code
Exported functions with examples: 100%
Documented parameters: 97%
Return-value docs: 100%
Help pages citing references: 2%

Vignettes (2)

How these are measured

Downloads

7.4K

CRAN downloads in the past year

Rank #5,020 · ~20/day · ~616/mo

Releases R versions

Daily download trend is not available in this view yet.

59230 days

1.7K90 days

7.4K1 year

Compare downloads with other packages →

Also on248 r2u2 autocran2.8K conda_forge

How downloads are counted

Repository

stemangiola/tidyseurat ↗Account: stemangiola

166Stars

15Forks

7Open issues

2Open PRs

10Releases

440Commits

10Commit identities

tibblesingle-cell-rna-seqseurattidyverseggplot2pcaumaptsne

440 commits · Last activity 2026-02-25 · 0% stars, 30d · The default branch showed an older version (0.8.9) than CRAN on 2026-10-22

Responsiveness

How these are sampled

PRs merged (all time): 93%
Median days to close, 50 most recently updated closed issues: 6
Median days to close, 50 most recently updated closed PRs: 1

Stars over time

2025-04-14 · 1582026-07-07 · 166

How these are measured

PracticesBeta

8 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/stemangiola/tidyseurat on 2026-10-22.

Continuous integration (3)

GitHub ActionsR CMD check workflowTravis CI (config file)

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Governance and community (1)

Issue templates

Docs source (3)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-02-25

Coverage (1)

Coverage reporting (Codecov)

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

24 external dependencies (excludes base and recommended)

Installing tidyseurat adds 137 packages (82 with compiled code, 128 MB of source tarballs). Heaviest: BH 14 MB, stringi 11 MB, ggplot2 6.0 MB.

Depends (3)

R >= 4.1.0ttservice SeuratObject

Imports (20)

Seurat tibble dplyr magrittr tidyr ggplot2 rlang purrr lifecyclemethodsplotly tidyselectutilsvctrs pillar stringr cli fansiMatrixgenerics

LinkingTo (0)

none

Suggests (5)

testthat knitr GGally markdown rbibutils

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Stefano Mangiola

Author, Maintainer since 0.1.6 (2020)

Maria Doyle

Contributor

Releases (18)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.8.10Latest
record
2026-02-26 · current release · diff ↗ ·
added 1 export
add_count
0.8.7
record
2025-11-10 · diff ↗ ·
removed 1 export
tidy
0.8.4
record
2025-10-02 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.8.0
record
2024-01-10 · diff ↗
0.7.9
record
2023-11-28 · diff ↗
unarchivedReturned to CRAN
2023-10-02
0.7.4
record
2023-10-02 · diff ↗ ·
removed 36 exports
add_count, arrange, as_tibble, bind_rows, count, distinct, extract, filter, full_join, ggplot, glimpse, group_by, inner_join, join_features, left_join, mutate, nest, pivot_longer, pull, rename, right_join, rowwise, sample_frac, sample_n, select, separate, slice, slice_head, slice_max, slice_min and 6 more
archivedRemoved from CRAN
2023-09-16
issues were not corrected in time
0.7.2
record
2023-08-25 · diff ↗ ·
removed 1 export
aggregate_cells

added 4 exports
slice_head, slice_max, slice_min, slice_tail
0.6.1
record
2023-06-20 · diff ↗ ·
removed 1 export
bind_cols

added 1 export
aggregate_cells
R
R 4.3.0 released · 2023-04-21
0.5.9
record
2023-02-25 · diff ↗ ·
added 2 exports
slice_sample, unnest_seurat
0.5.3
record
2022-05-20 · diff ↗ ·
added 1 export
tbl_format_header

Show 17 earlier eventsHide 17 earlier events

R
R 4.2.0 released · 2022-04-22
0.5.1
record
2022-02-03 · diff ↗
0.3.0
record
2021-10-19 · diff ↗
0.2.7
record
2021-08-25 · diff ↗ ·
added 1 export
join_features
R
R 4.1.0 released · 2021-05-18
unarchivedReturned to CRAN
2021-03-22
0.2.0
record
2021-03-22 · diff ↗ ·
added 2 exports
add_count, glimpse
archivedRemoved from CRAN
2021-02-13
check problems were not corrected in time
unarchivedReturned to CRAN
2020-11-23
0.1.17
record
2020-11-23 · diff ↗
archivedRemoved from CRAN
2020-10-30
check problems had still not been corrected clang-using platforms, ATLAS
unarchivedReturned to CRAN
2020-10-28
0.1.11
record
2020-10-28 · diff ↗
archivedRemoved from CRAN
2020-09-25
check problems were not corrected in time Not using packages in Suggests conditionally
0.1.8
record
2020-09-15 · diff ↗
0.1.6
record
2020-09-11
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-09-11
Total releases: 18 / 6 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.1.0
Bundled data: 2.9 KB / 2 files
Download size: 1.5 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("tidyseurat")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1093/bioinformatics/btab404.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for tidyseurat version 0.8.10 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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