R Observatory: Metrics for statgenSTA version 1.0.15

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

statgenSTA

1.0.15

Single Trial Analysis (STA) of Field Trials

2packages depend

7.7Kdownloads / year

73.3%test coverage

11/13checks pass

Overview

About

Maintained by Bart-Jan van RossumFirst published 2020-01-1414 releasesCRAN page ↗GitHub ↗

Phenotypic analysis of field trials using mixed models with and without spatial components. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris. Some functions have been created to be used in conjunction with the R package 'asreml' for the 'ASReml' software, which can be obtained upon purchase from 'VSN' international (https://vsni.co.uk/software/asreml-r/).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("statgenSTA", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Biometris/statgenSTA")

Development version from Biometris/statgenSTA. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-statgensta

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-statgenSTA

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-statgenSTA

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc

Slowest check: 4.8 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.39

73.3%

Coverage · measured lines

100%

Documentation · exports

13

Dependencies · direct

Check history

NOTE2026-06-09
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
10 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 192 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 92%
Documented parameters: 100%
Return-value docs: 50%
References docs: 18%

Downloads

7.7K

CRAN downloads in the past year

Rank #4,682 · ~21/day · ~638/mo

Releases R versions

Daily download trend is not available in this view yet.

41730 days

1.7K90 days

7.7K1 year

Compare downloads with other packages →

Also on145 r2u14 autocran36 c2d4u

Repository

GitHub ↗ biometris/statgensta

6Stars

2Forks

2Open issues

0Open PRs

0Releases

1,086Commits

4Contributors

geneticssingle-trial-analysiscranr-package

1,086 commits · Last activity 2025-06-24 · 0% stars, 30d

Stars over time

2025-05-26 · 52026-07-07 · 6

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/biometris/statgensta on 2026-08-16.

Continuous integration (2)

GitHub ActionsGitLab CI

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.3

Imports (13)

emmeans ggplot2 ggrepel gridExtra knitr lme4 mapproj maps qtl rlang scales SpATS (>= 1.0-18)xtable

LinkingTo (0)

none

Suggests (4)

asreml rmarkdown testthat tibble

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

1indirect

agriutilities statgenGxE

Code & Tests

Datasets

People & History

People (11)

Maintainer (1)

Bart-Jan van Rossum

Author, Maintainer

Authors (1)

Bart-Jan van Rossum

Author, Maintainer

Contributors (10)

Contributor

Contributor

Contributor

Contributor

Contributor · added in 1.0.5

Joao Paulo

Contributor

Maikel Verouden

Contributor

Ron Wehrens

Contributor

Show 2 more contributors

Choazhi Zheng

Contributor

Fred van Eeuwijk

Contributor

Listed in earlier versions (1)

Emilie Millet

no longer listed · 1.0.2 to 1.0.4

Package Timeline

14 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.15Latest
2025-06-24 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.0.14
2024-10-14 · diff ↗
1.0.13
2024-05-06 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0.12
2023-11-03 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.0.11
2023-01-11 · diff ↗
1.0.10
2022-12-01 · diff ↗
1.0.9
2022-06-24 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.0.8
2021-05-25 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.0.7
2021-03-29 · diff ↗
1.0.6
2020-09-23 · diff ↗

Show 6 earlier events

1.0.5
2020-06-24 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.0.4
2020-03-23 · diff ↗
1.0.3
2020-02-18 · diff ↗
1.0.2
2020-01-14
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-01-14
Total releases: 14 / 6 yrs
License: GPL
Minimum R: ≥ 3.3
Bundled data: 207 KB / 3 files
Download size: 3.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Agricultural Science

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("statgenSTA")

Format

van Rossum, B., Boer, M., Bustos-Korts, D., Kruijer, W., Malosetti, M., Millet, E. J., Paulo, J., Verouden, M., Wehrens, R., Zheng, C., & van Eeuwijk, F. (2025). statgenSTA: Single Trial Analysis (STA) of Field Trials (Version 1.0.15) [Computer software]. https://doi.org/10.32614/CRAN.package.statgenSTA

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for statgenSTA version 1.0.15 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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