R Observatory: Metrics for agriutilities version 1.2.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

agriutilities

1.2.3Package record

Utilities for Data Analysis in Agriculture

1packages depend

7.7Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Johan AparicioCRAN page ↗GitHub ↗Website ↗Issues ↗

Utilities designed to make the analysis of field trials easier and more accessible for everyone working in plant breeding. It provides a simple and intuitive interface for conducting single and multi-environmental trial analysis, with minimal coding required. Whether you're a beginner or an experienced user, 'agriutilities' will help you quickly and easily carry out complex analyses with confidence. With built-in functions for fitting Linear Mixed Models, 'agriutilities' is the ideal choice for anyone who wants to save time and focus on interpreting their results. Some of the functions require the R package 'asreml' for the 'ASReml' software, this can be obtained upon purchase from 'VSN' international https://vsni.co.uk/software/asreml-r/.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("agriutilities", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("AparicioJohan/agriutilities")

Development version from AparicioJohan/agriutilities. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-agriutilities

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-agriutilities

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-agriutilities

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.7 min · r-release-windows-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09

Show 3 earlier changesHide 3 earlier changes

ERROR12 OK, 1 ERROR2026-06-08
OK12 OK2026-04-25
NOTE11 OK, 3 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.2.3

READMEYes · 443 wordsVignettesYes · 2 · dynamicNEWS· In the repository, left out of the releaseCitation fileNoWebsiteYes · pkgdown

Help pages: 23 (1 internal)
Examples that run: 29%6 run in a plain check · 7 only when donttest examples are enabled (R CMD check --as-cran) · 8 never run
Exported functions with examples: 88%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 13%

Vignettes (2)

How to Start HTML
Repeated Measurements HTML

How these are measured

Downloads

7.7K

CRAN downloads in the past year

Rank #4,943 · ~21/day · ~641/mo

Releases R versions

Daily download trend is not available in this view yet.

59630 days

1.7K90 days

7.7K1 year

Compare downloads with other packages →

Also on172 r2u12 autocran

How downloads are counted

Repository

apariciojohan/agriutilities ↗Account: AparicioJohan

23Stars

5Forks

1Open issues

0Open PRs

3Releases

228Commits

5Commit identities

lmmplant-breedingmet-analysis

228 commits · Last activity 2026-01-12 · +4.5% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 9
Median days to close, 50 most recently updated closed PRs: 2

Stars over time

2025-09-03 · 212026-10-13 · 23

How these are measured

PracticesBeta

10 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/apariciojohan/agriutilities on 2026-10-21.

Continuous integration (1)

GitHub Actions

Governance and community (1)

Code of conduct

Docs source (3)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-01-12

pkgdown site last built 2024-06-17, before release 1.2.3 (2026-01-12)

CRAN release process (3)

cran-comments.mdrevdep/CRAN-SUBMISSION

Show all practicesHide 2 practices

Lint, format, editor (1)

RStudio project

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Installing agriutilities adds 90 packages (44 with compiled code, 94 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (0)

none

Imports (17)

ggplot2 psych dplyr tidyr lme4Matrixggpubr lmerTest data.tablestatsmagrittr emmeans ggrepel tibble rlang statgenSTA SpATS

LinkingTo (0)

none

Suggests (6)

knitrlatticeclusterrmarkdown agridat gt

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Imports 1

Depends, Imports or LinkingTo, most downloaded first

flexFitR

How these are counted

Code & Tests

People & History

People (3)

Johan Aparicio

Author, Maintainer since 1.0.0 (2023)

Alexia Bornhorst

Author

The Alliance of Bioversity International and CIAT

Copyright holder

Releases (6)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.2.3Latest
record
2026-01-12 · current release · diff ↗
unarchivedReturned to CRAN
2025-10-17
1.2.2
record
2025-10-17 · diff ↗
archivedRemoved from CRAN
2025-10-15
check issues were not corrected in time
R
R 4.5.0 released · 2025-04-11
1.2.1
record
2025-01-18 · diff ↗ ·
added 3 exports
h_cullis_spt, ic_reml_asr, ic_reml_spt
R
R 4.4.0 released · 2024-04-24
1.2.0
record
2024-01-20 · diff ↗ ·
added 1 export
extract_rcov
R
R 4.3.0 released · 2023-04-21
1.1.0
record
2023-03-19 · diff ↗
1.0.0
record
2023-02-16
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2023-02-16
Total releases: 6 / 3 yrs
License: MIT + file LICENSE OSI
Download size: 1.7 MB

Appears in task views

Agricultural Science

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("agriutilities")

Format

Aparicio, J., The Alliance of Bioversity International and CIAT, & Bornhorst, A. (2026). agriutilities: Utilities for Data Analysis in Agriculture (Version 1.2.3) [Computer software]. https://doi.org/10.32614/CRAN.package.agriutilities

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for agriutilities version 1.2.3 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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