R Observatory: Metrics for sitrep version 0.4.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

sitrep

0.4.1

Report Templates and Helper Functions for Applied Epidemiology

1packages depend

2.3Kdownloads / year

47.4%test coverage

13/13checks pass

Overview

About

Maintained by Alexander SpinaFirst published 2025-12-224 releasesCRAN page ↗GitHub ↗

A meta-package that loads the complete sitrep ecosystem for applied epidemiology analysis. This package provides report templates and automatically loads companion packages, including 'epitabulate' (for epidemiological tables), 'epidict' (for data dictionaries), 'epikit' (for epidemiological utilities), and 'apyramid' (for age-sex pyramids). Simply load 'sitrep' to access all functions from the ecosystem.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("sitrep", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("R4EPI/sitrep")

Development version from R4EPI/sitrep. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-sitrep

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-sitrep

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

Slowest check: 2.7 min · r-oldrel-macos-x86_64

Code health

Yes

Tests · ratio 0.37

47.4%

Coverage · measured lines

100%

Documentation · exports

5

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 379 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 25%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.3K

CRAN downloads in the past year

Rank #15,186 · ~6/day · ~192/mo

Releases R versions

Daily download trend is not available in this view yet.

18130 days

68790 days

2.3K1 year

Compare downloads with other packages →

Also on65 r2u

Repository

GitHub ↗ r4epi/sitrep

45Stars

18Forks

8Open issues

0Open PRs

15Releases

1,314Commits

10Contributors

r-packagereport-generatorepidemiologyoutbreaksmsf

License GPL-3.0 · 1,314 commits · Last activity 2026-02-25 · 0% stars, 30d

Stars over time

2025-07-29 · 432026-07-07 · 45

Repository practices

Upstream repositoryBeta

7 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/r4epi/sitrep on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Show all practices

Coverage (1)

Codecov

Governance and community (2)

Issue templatesSupport guide

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

44 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.2

Imports (5)

apyramid epidict epikit epitabulateutils

LinkingTo (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

epidict

Code & Tests

People & History

People (11)

Maintainer (1)

Alexander Spina

Author, Maintainer

Authors (7)

Author, Maintainer

Author

Author

Author

Author

Author

Author

Contributors (2)

Neale Batra

Contributor

Annick Lenglet

Contributor

Copyright holders (1)

Applied Epi Incorporated

Copyright holder

Funders (1)

Medecins Sans Frontieres Operational Centre Amsterdam

Funder

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.4.1Latest
2026-02-24 · current release · diff ↗
0.4.0
2026-01-20 · diff ↗
0.3.0
2026-01-11 · diff ↗
0.2.3
2025-12-22
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-12-22
Total releases: 4 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.2
Download size: 3.2 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("sitrep")

Format

Spina, A., Applied Epi Incorporated, Medecins Sans Frontieres Operational Centre Amsterdam, Batra, N., Blomquist, P., Doyle, K., Jarvis, C., Kamvar, Z. N., Lenglet, A., Richter, L., & Schumacher, D. (2026). sitrep: Report Templates and Helper Functions for Applied Epidemiology (Version 0.4.1) [Computer software]. https://doi.org/10.32614/CRAN.package.sitrep

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for sitrep version 0.4.1 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →