R Observatory: Metrics for epitabulate version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

epitabulate

0.1.0Package record

Tables for Epidemiological Analysis

1packages depend

2.9Kdownloads / year

90.8%test coverage

13/13flavors OK

Overview

About

Maintained by Alexander SpinaCRAN page ↗GitHub ↗Website ↗Issues ↗Declared funder: Medecins Sans Frontieres Operational Centre Amsterdam

Produces tables for descriptive epidemiological analysis. These tables include attack rates, case fatality ratios, and mortality rates (with appropriate confidence intervals), with additional functionality to calculate Mantel-Haenszel odds, risk, and incidence rate ratios. The methods implemented follow standard epidemiological approaches described in Rothman et al. (2008, ISBN:978-0-19-513554-2). This package is part of the 'R4EPIs' project https://R4EPI.github.io/sitrep/.

Changes in 0.1.0

first CRAN release
wrapper functions {gtsummary} finalised
obsolete functions removed
removed {epidict} from examples - no longer in suggests

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("epitabulate", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("R4EPI/epitabulate")

Development version from R4EPI/epitabulate. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-epitabulate

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-epitabulate

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-epitabulate

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.3 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-02

Show 2 earlier changesHide 2 earlier changes

ERROR11 OK, 1 ERROR2026-04-25
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.0

READMEYes · 620 wordsVignettesNoNEWSYes · 100% structured · mentions 0.1.0Citation fileNoWebsiteYes · pkgdown

Help pages: 7
Examples that run: no examples
Exported functions with examples: 0%
Documented parameters: 97%
Return-value docs: 100%
Help pages citing references: 29%

How these are measured

Downloads

2.9K

CRAN downloads in the past year

Rank #16,252 · ~8/day · ~245/mo

Releases R versions

Daily download trend is not available in this view yet.

26730 days

76190 days

2.9K1 year

Compare downloads with other packages →

Also on70 r2u2 autocran

How downloads are counted

Repository

r4epi/epitabulate ↗Organization: R4EPI

8Stars

0Forks

0Open issues

0Open PRs

3Releases

169Commits

3Commit identities

License file reads as GPL-3.0 · 169 commits · Last activity 2025-11-14 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 91%
Median days to close, 50 most recently updated closed issues: 638
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2024-04-01 · 72026-07-07 · 8

How these are measured

PracticesBeta

12 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/r4epi/epitabulate on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Governance and community (4)

Code of conductContributing guideIssue templatesSupport guide

Docs source (3)

README.Rmd

GitHub Pages site last deployed 2025-11-14 · The repository has a site deploy workflow

Coverage (1)

Coverage reporting (Codecov)

Show all practicesHide 2 practices

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Installing epitabulate adds 78 packages (41 with compiled code, 73 MB of source tarballs). Heaviest: stringi 11 MB, sf 9.3 MB, ggplot2 6.0 MB.

Depends (0)

none

Imports (14)

binom dplyr epikit forcats glue gtsummaryMASSpurrr rlang scalesstatstibble tidyr tidyselect

LinkingTo (0)

none

Suggests (5)

broom.helpers cardx covr matchmaker testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Imports 1

Depends, Imports or LinkingTo, most downloaded first

sitrep

How these are counted

Code & Tests

People & History

People (6)

Alexander Spina

Author, Maintainer since 0.1.0 (2025)

Amy Gimma

Author

Zhian N. Kamvar

Author

Kate Doyle

Contributor

Applied Epi Incorporated

Copyright holder

Medecins Sans Frontieres Operational Centre Amsterdam

Funder

Releases (1)

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
record
2025-11-13 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-11-13
Total releases: 1 / 1 yrs
License: GPL-3 OSI
Download size: 29 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("epitabulate")

Format

Spina, A., Applied Epi Incorporated, Medecins Sans Frontieres Operational Centre Amsterdam, Doyle, K., Gimma, A., & Kamvar, Z. N. (2025). epitabulate: Tables for Epidemiological Analysis (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.epitabulate

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for epitabulate version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-10-20. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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