rbiom

Read/Write, Analyze, and Visualize 'BIOM' Data

v2.2.1 · Jun 27, 2025 · MIT + file LICENSE

Description

A toolkit for working with Biological Observation Matrix ('BIOM') files. Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and beta diversity (including 'UniFrac'). Summarize counts by taxonomic level. Subset based on metadata. Generate visualizations and statistical analyses. CPU intensive operations are coded in C for speed.

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CRAN Check Status

14 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	326.1s
r-devel-linux-x86_64-debian-gcc	OK	220.8s
r-devel-linux-x86_64-fedora-clang	OK	479.9s
r-devel-linux-x86_64-fedora-gcc	OK	488.3s
r-devel-macos-arm64	OK	76s
r-devel-windows-x86_64	OK	338s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	181s
r-oldrel-windows-x86_64	OK	412s
r-patched-linux-x86_64	OK	304.3s
r-release-linux-x86_64	OK	288.2s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	176s
r-release-windows-x86_64	OK	324s

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Version History

new 2.2.1 Mar 10, 2026

updated 2.2.1 ← 2.2.0 diff Jun 26, 2025

updated 2.2.0 ← 2.1.2 diff Apr 3, 2025

updated 2.1.2 ← 2.1.1 diff Mar 17, 2025

updated 2.1.1 ← 2.0.13 diff Mar 9, 2025

updated 2.0.13 ← 2.0.10 diff Jan 23, 2025

updated 2.0.10 ← 2.0.7 diff Jan 18, 2025

updated 2.0.7 ← 1.0.3 diff Jan 10, 2025

updated 1.0.3 ← 1.0.2 diff Nov 4, 2021

updated 1.0.2 ← 1.0.0 diff May 28, 2020

new 1.0.0 May 25, 2020