R Observatory: Metrics for patternize version 0.0.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

patternize

0.0.5Package record

Quantification of Color Pattern Variation

0packages depend

3.3Kdownloads / year

–test coverage

0/13flavors OK

Overview

About

Maintained by Steven Van BelleghemCRAN page ↗GitHub ↗Issues ↗

Quantification of variation in organismal color patterns as obtained from image data. Patternize defines homology between pattern positions across images either through fixed landmarks or image registration. Pattern identification is performed by categorizing the distribution of colors using RGB thresholds or image segmentation.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("patternize", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("StevenVB12/patternize")

Development version from StevenVB12/patternize. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-patternize

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-patternize

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13NOTE

Check messages

NOTERd filesr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

checkRd: (-1) plotHeat.Rd:113: Lost braces
   113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
       |     ^

CRAN check page ↗

Slowest check: 9.5 min · r-oldrel-windows-x86_64

Status changes

NOTE13 NOTE2026-06-09
ERROR12 NOTE, 1 ERROR2026-06-08
NOTE14 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.0.5

READMEYes · 463 wordsVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 45includes a package overview page
Examples that run: 39%12 run in a plain check · 19 never run
Exported functions with examples: 67%
Documented parameters: 100%
Return-value docs: 86%
Help pages citing references: 0%

How these are measured

Downloads

3.3K

CRAN downloads in the past year

Rank #15,116 · ~9/day · ~274/mo

Releases R versions

Daily download trend is not available in this view yet.

30730 days

80890 days

3.3K1 year

Compare downloads with other packages →

Also on94 r2u

How downloads are counted

Repository

stevenvb12/patternize ↗Account: StevenVB12

35Stars

8Forks

37Open issues

1Open PRs

0Releases

242Commits

2Commit identities

242 commits · Last activity 2024-06-25 · +2.9% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): not measured
Median days to close, 50 most recently updated closed issues: 2
Median days to close, 50 most recently updated closed PRs: not measured

Stars over time

2025-07-29 · 342026-10-16 · 35

How these are measured

PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/stevenvb12/patternize on 2026-10-21.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Installing patternize adds 111 packages (66 with compiled code, 130 MB of source tarballs). Heaviest: stringi 11 MB, sf 9.3 MB, ggplot2 6.0 MB.

Depends (1)

R >= 3.5.0

Imports (14)

raster sp sf abind Morpho dplyr imager magrittrmethodspurrr vegan RNiftyReg geomorph ClusterR

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Steven Van Belleghem

Author, Maintainer since 0.0.1 (2017)

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.0.5Latest
record
2023-08-22 · current release · diff ↗
0.0.4
record
2023-08-15 · diff ↗ ·
added 1 export
colorChecker_half
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.0.3
record
2022-01-03 · diff ↗ ·
added 15 exports
GMMImage, alignLan, alignReg, colorChecker_customGray, createPhenotype, kImageHSV, patGMM, patK, patK_HSV, patLanHSV, patLanK_HSV, patRegHSV, patRegK_HSV, plotRasterstackAsImage, setMask
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.0.2
record
2018-11-23 · diff ↗ ·
added 6 exports
colorChecker, patLanW, patRDA, patRegW, sampleLandmarks, sampleRGB
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
0.0.1
record
2017-03-29
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2017-03-29
Total releases: 5 / 9 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 79 KB / 7 files
Download size: 449 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("patternize")

Format

Van Belleghem, S. (2023). patternize: Quantification of Color Pattern Variation (Version 0.0.5) [Computer software]. https://doi.org/10.32614/CRAN.package.patternize

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for patternize version 0.0.5 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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