R Observatory: Metrics for meconetcomp version 0.7.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

meconetcomp

0.7.0

Compare Microbial Networks of 'trans_network' Class of 'microeco' Package

0packages depend

4.2Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Chi LiuFirst published 2022-09-0610 releasesCRAN page ↗GitHub ↗

Compare microbial co-occurrence networks created from 'trans_network' class of 'microeco' package https://github.com/ChiLiubio/microeco. This package is the extension of 'trans_network' class of 'microeco' package and especially useful when different networks are constructed and analyzed simultaneously.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("meconetcomp", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ChiLiubio/meconetcomp")

Development version from ChiLiubio/meconetcomp. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-meconetcomp

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-meconetcomp

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-meconetcomp

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.4 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

8

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 62%
Documented parameters: 100%
Return-value docs: 77%
References docs: 0%

Downloads

4.2K

CRAN downloads in the past year

Rank #9,292 · ~12/day · ~353/mo

Releases R versions

Daily download trend is not available in this view yet.

29630 days

99490 days

4.2K1 year

Compare downloads with other packages →

Also on175 r2u1 autocran

Repository

GitHub ↗ chiliubio/meconetcomp

12Stars

0Forks

14Open issues

0Open PRs

9Releases

66Commits

1Contributors

License GPL-3.0 · 66 commits · Last activity 2026-03-25 · 0% stars, 30d

Stars over time

2025-03-18 · 102026-07-07 · 12

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/chiliubio/meconetcomp on 2026-08-16.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (8)

R6 microeco magrittr dplyr igraph reshape2 ggpubr ggplot2

LinkingTo (0)

none

Suggests (4)

rgexf ape file2meco agricolae

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Chi Liu

Author, Maintainer

Authors (1)

Chi Liu

Author, Maintainer

Contributors (2)

Xiangzhen Li

Contributor

Minjie Yao

Contributor

Package Timeline

10 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.7.0Latest
2026-01-08 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
0.6.1
2025-02-24 · diff ↗
0.6.0
2025-01-07 · diff ↗
0.5.1
2024-06-23 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.5.0
2024-03-30 · diff ↗
0.4.1
2023-11-18 · diff ↗
0.4.0
2023-10-29 · diff ↗
0.3.0
2023-08-08 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.2.0
2022-10-05 · diff ↗
0.1.0
2022-09-06
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-09-06
Total releases: 10 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 1.6 MB / 4 files
Download size: 1.6 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("meconetcomp")

Format

Liu, C., Li, X., & Yao, M. (2026). meconetcomp: Compare Microbial Networks of 'trans_network' Class of 'microeco' Package (Version 0.7.0) [Computer software]. https://doi.org/10.32614/CRAN.package.meconetcomp

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for meconetcomp version 0.7.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →