R Observatory: Metrics for file2meco version 0.9.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

file2meco

0.9.1

Transform Files to 'microtable' Object with 'microeco' Package

1packages depend

13.2Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Chi LiuFirst published 2021-09-0915 releasesCRAN page ↗GitHub ↗

Transform output files of some tools to the 'microtable' object of 'microtable' class in 'microeco' package. The 'microtable' class is the basic class in 'microeco' package and is necessary for the downstream microbial community data analysis.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("file2meco", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ChiLiubio/file2meco")

Development version from ChiLiubio/file2meco. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-file2meco

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 2.8 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

8

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-16
13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-13
12 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 1 earlier snapshots

NOTE2026-03-10
13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 10%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

13.2K

CRAN downloads in the past year

Rank #3,398 · ~36/day · ~1.1K/mo

Releases R versions

Daily download trend is not available in this view yet.

83130 days

3K90 days

13.2K1 year

Compare downloads with other packages →

Also on107 r2u

Repository

GitHub ↗ chiliubio/file2meco

29Stars

4Forks

10Open issues

0Open PRs

14Releases

105Commits

1Contributors

License GPL-3.0 · 105 commits · Last activity 2026-05-29

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/chiliubio/file2meco on 2026-08-23.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (8)

microeco ape magrittr dplyr tidyr yaml rhdf5Matrix

LinkingTo (0)

none

Suggests (6)

Biostrings seqinr phyloseq readxl SummarizedExperiment TreeSummarizedExperiment

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

meconetcomp

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Chi Liu

Author, Maintainer

Authors (1)

Chi Liu

Author, Maintainer

Package Timeline

15 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.9.1Latest
2024-11-19 · current release · diff ↗
0.9.0
2024-10-31 · diff ↗
0.8.0
2024-06-30 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.7.1
2024-03-07 · diff ↗
0.7.0
2023-11-10 · diff ↗
0.6.0
2023-05-05 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.5.0
2022-11-15 · diff ↗
0.4.0
2022-08-07 · diff ↗
0.3.0
2022-06-07 · diff ↗
0.2.4
2022-05-24 · diff ↗
unarchivedReturned to CRAN
2022-05-24
archivedRemoved from CRAN
2022-05-18
check issues were not corrected in time

Show 7 earlier events

0.2.3
2022-05-06 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.2.2
2022-03-23 · diff ↗
0.2.1
2022-01-06 · diff ↗
0.2.0
2021-11-16 · diff ↗
0.1.0
2021-09-09
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-09-09
Total releases: 15 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 99 KB / 4 files
Download size: 900 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("file2meco")

Format

Liu, C. (2024). file2meco: Transform Files to 'microtable' Object with 'microeco' Package (Version 0.9.1) [Computer software]. https://doi.org/10.32614/CRAN.package.file2meco

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for file2meco version 0.9.1 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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