R Observatory: Metrics for hommel version 1.8

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

hommel

1.8Package record

Methods for Closed Testing with Simes Inequality, in Particular Hommel's Method

5packages depend

7.4Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Jelle GoemanCRAN page ↗

Provides methods for closed testing using Simes local tests. In particular, calculates adjusted p-values for Hommel's multiple testing method, and provides lower confidence bounds for true discovery proportions. A robust but more conservative variant of the closed testing procedure that does not require the assumption of Simes inequality is also implemented. The methods have been described in detail in Goeman et al (Biometrika 106, 841-856, 2019).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("hommel", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hommel

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-hommel

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-hommel

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.2 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-04-22
ERROR13 OK, 1 ERROR2026-04-18
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.8

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 6includes a package overview page
Examples that run: 100%5 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 100%

How these are measured

Downloads

7.4K

CRAN downloads in the past year

Rank #4,540 · ~20/day · ~617/mo

Releases R versions

Daily download trend is not available in this view yet.

78230 days

1.8K90 days

7.4K1 year

Compare downloads with other packages →

Also on441 r2u6 autocran79 c2d4u

How downloads are counted

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Installing hommel adds 1 package (1 with compiled code, 1.8 MB of source tarballs). Heaviest: Rcpp 1.8 MB.

Depends (0)

none

Imports (2)

Rcppmethods

LinkingTo (1)

Rcpp

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

5direct

7indirect

Depends 1 · Imports 4

Depends, Imports or LinkingTo, most downloaded first

HIMA cherry ARIbrain rSEA MultiGroupSequential

How these are counted

Code & Tests

People & History

People (3)

Jelle Goeman

Author, Maintainer since 1.0 (2017)

Thijmen Krebs

Author

Rosa Meijer

Author

Releases (8)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.8Latest
record
2025-01-14 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.6
record
2021-12-17 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.5
record
2019-12-02 · diff ↗
1.4
record
2019-10-02 · diff ↗
1.3
record
2019-08-19 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.2
record
2018-11-15 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.1
record
2017-07-12 · diff ↗

Show 2 earlier eventsHide 2 earlier events

1.0
record
2017-05-17
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-05-17
Total releases: 8 / 9 yrs
License: GPL (>= 2) OSI
Download size: 11 KB

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("hommel")

Format

Goeman, J., Krebs, T., & Meijer, R. (2025). hommel: Methods for Closed Testing with Simes Inequality, in Particular Hommel's Method (Version 1.8) [Computer software]. https://doi.org/10.32614/CRAN.package.hommel

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for hommel version 1.8 [Data set]. HJJB, LLC. Data release v2026-10-19. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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