R Observatory: Metrics for genscore version 1.0.2.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

genscore

1.0.2.2

Generalized Score Matching Estimators

1packages depend

2.5Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Shiqing YuFirst published 2020-04-034 releasesCRAN page ↗GitHub ↗

Implementation of the Generalized Score Matching estimator in Yu et al. (2019) https://jmlr.org/papers/v20/18-278.html for non-negative graphical models (truncated Gaussian, exponential square-root, gamma, a-b models) and univariate truncated Gaussian distributions. Also includes the original estimator for untruncated Gaussian graphical models from Lin et al. (2016) doi:10.1214/16-EJS1126, with the addition of a diagonal multiplier.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("genscore", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("sqyu/genscore")

Development version from sqyu/genscore. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-genscore

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-genscore

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-genscore

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 4.2 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

4

Dependencies · direct

Check history

NOTE2026-06-09
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-06-08
11 OK · 1 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 343 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 3%

Downloads

2.5K

CRAN downloads in the past year

Rank #13,818 · ~7/day · ~212/mo

Releases R versions

Daily download trend is not available in this view yet.

19530 days

74090 days

2.5K1 year

Compare downloads with other packages →

Also on449 r2u20 autocran

Repository

GitHub ↗ sqyu/genscore

3Stars

2Forks

0Open issues

0Open PRs

0Releases

42Commits

1Contributors

graphical-modelsscore-matchingdensity-estimationundirected-graphsinteraction-models

42 commits · Last activity 2020-04-24 · 0% stars, 30d

Stars over time

2025-07-21 · 22026-07-07 · 3

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/sqyu/genscore on 2026-08-16.

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (4)

Rdpack mvtnorm tmvtnorm stringr

LinkingTo (0)

none

Suggests (6)

Matrixigraph zoo knitr rmarkdown cubature

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

HGMND

Code & Tests

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (3)

Wally Gilks

no longer listed · 1.0.0 to 1.0.2.2

Lina Lin

no longer listed · 1.0.0 to 1.0.2.2

Shiqing Yu

no longer listed · 1.0.0 to 1.0.2.2

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.2.2Latest
2023-12-16 · current release · diff ↗
1.0.2.1
2023-05-12 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.0.2
2020-04-27 · diff ↗
unarchivedReturned to CRAN
2020-04-27
R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2020-04-04
corrupts memory ASAN and valgrind show illegal writes
1.0.0
2020-04-03
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-04-03
Total releases: 4 / 6 yrs
License: GPL-3 OSI
Download size: 880 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("genscore")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for genscore version 1.0.2.2 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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