R Observatory: Metrics for genscore version 1.0.2.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

genscore

1.0.2.2Package record

Generalized Score Matching Estimators

1packages depend

2.8Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Shiqing YuCRAN page ↗GitHub ↗Issues ↗

Implementation of the Generalized Score Matching estimator in Yu et al. (2019) https://jmlr.org/papers/v20/18-278.html for non-negative graphical models (truncated Gaussian, exponential square-root, gamma, a-b models) and univariate truncated Gaussian distributions. Also includes the original estimator for untruncated Gaussian graphical models from Lin et al. (2016) doi:10.1214/16-EJS1126, with the addition of a diagonal multiplier.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("genscore", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("sqyu/genscore")

Development version from sqyu/genscore. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-genscore

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-genscore

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-genscore

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Shiqing Yu <syu.phd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shiqing",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "syu.phd@gmail.com"),
               person(given = "Lina",
                      family = "Lin",
                      role = "aut"),
               person(given = "Wally",
                      family = "Gilks",
                      role = "aut"))
as necessary.

CRAN check page ↗

Slowest check: 4.0 min · r-devel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTE2026-06-09
WARNING11 OK, 1 NOTE, 1 WARNING2026-06-08
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.2.2

READMEYes · 343 wordsVignettesYes · 1 · staticNEWSYes · 100% structured · does not mention 1.0.2.2Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 71
Examples that run: 100%63 run in a plain check
Exported functions with examples: 91%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 3% with a bibliography file

Also includes 1 demo script (run with demo())

Vignettes (1)

my-vignette HTML

How these are measured

Downloads

2.8K

CRAN downloads in the past year

Rank #14,028 · ~8/day · ~233/mo

Releases R versions

Daily download trend is not available in this view yet.

30930 days

84490 days

2.8K1 year

Compare downloads with other packages →

Also on391 r2u8 autocran

How downloads are counted

Repository

sqyu/genscore ↗Account: sqyu

3Stars

2Forks

0Open issues

0Open PRs

0Releases

42Commits

1Commit identities

graphical-modelsscore-matchingdensity-estimationundirected-graphsinteraction-models

42 commits · Last activity 2020-04-24 · 0% stars, 30d · The default branch showed an older version (1.0.2) than CRAN on 2026-10-21

Responsiveness

not measured

Stars over time

2025-07-21 · 22026-07-07 · 3

How these are measured

PracticesBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/sqyu/genscore on 2026-10-21.

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Installing genscore adds 15 packages (11 with compiled code, 20 MB of source tarballs). Heaviest: stringi 11 MB, sandwich 1.4 MB, rbibutils 1.1 MB.

Depends (0)

none

Imports (4)

Rdpack mvtnorm tmvtnorm stringr

LinkingTo (0)

none

Suggests (6)

Matrixigraph zoo knitr rmarkdown cubature

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Imports 1

Depends, Imports or LinkingTo, most downloaded first

HGMND

How these are counted

Code & Tests

People & History

People (from the free-text Author field) (3)

Shiqing Yu

Lina Lin

Wally Gilks

Maintainer since 1.0.0 (2020)

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.2.2Latest
record
2023-12-16 · current release · diff ↗
1.0.2.1
record
2023-05-12 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
unarchivedReturned to CRAN
2020-04-27
1.0.2
record
2020-04-27 · diff ↗
R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2020-04-04
corrupts memory ASAN and valgrind show illegal writes
1.0.0
record
2020-04-03
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-04-03
Total releases: 4 / 6 yrs
License: GPL-3 OSI
Download size: 880 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("genscore")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for genscore version 1.0.2.2 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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