R Observatory: Metrics for clinify version 0.4.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

clinify

0.4.0Package record

Clinical Table Styling Tools and Utilities

0packages depend

3.2Kdownloads / year

98.2%test coverage

13/13flavors OK

Overview

About

Maintained by Mike StackhouseCRAN page ↗Website ↗

The primary motivation of this package is to take the things that are great about the R packages 'flextable' https://davidgohel.github.io/flextable/ and 'officer' https://davidgohel.github.io/officer/, take the standard and complex pieces of formatting clinical tables for regulatory use, and simplify the tedious pieces.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("clinify", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-clinify

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-clinify

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-clinify

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 7.5 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-07-22
NOTE11 OK, 2 NOTE2026-07-11
OK13 OK2026-06-09

Show 4 earlier changesHide 4 earlier changes

ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-06-04
ERROR12 OK, 1 ERROR2026-06-03
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.4.0

READMEYes · 411 wordsVignettesYes · 6 · dynamicNEWS· In the repository, left out of the releaseCitation fileNoWebsiteYes · pkgdown

Help pages: 22
Examples that run: 100%22 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (6)

How these are measured

Downloads

3.2K

CRAN downloads in the past year

Rank #10,993 · ~9/day · ~269/mo

Releases R versions

Daily download trend is not available in this view yet.

33930 days

97390 days

3.2K1 year

Compare downloads with other packages →

Also on112 r2u3 autocran757 conda_forge

How downloads are counted

Repository

atorus-research/clinify ↗Organization: atorus-research

6Stars

4Forks

12Open issues

0Open PRs

3Releases

317Commits

6Commit identities

License file reads as Apache-2.0 · 317 commits · Last activity 2026-08-02

Responsiveness

How these are sampled

PRs merged (all time): 97%
Median days to close, 50 most recently updated closed issues: 441
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-05-07 · 62026-07-07 · 6

How these are measured

PracticesBeta

12 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/atorus-research/clinify on 2026-10-25.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-08-02 · The repository has a site deploy workflow

pkgdown site last built 2026-08-02

Coverage (1)

Coverage reporting (Codecov)

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Show all practicesHide 1 practice

Lint, format, editor (3)

lintrVS CodeRStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

AI coding toolsBeta

This repository shows signs of AI coding tools.

Claude Codefirst seen 2026-06-02
Seen in the repository: CLAUDE.md
Named in .Rbuildignore: .claude, CLAUDE.md
Named in .gitignore: .claude
Pull request it wrote: opened by a project member
Commits: at least 26 crediting it in the message

Models named in its commits

Claude Opus 520 commits · Jul to Aug 2026
Claude Opus 4.86 commits · Jun 2026

Counts are commits, not lines of code. Commits by a tool's accounts count once across all of its accounts. Commits crediting it are the largest count among its credit lines, a minimum.How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Installing clinify adds 59 packages (37 with compiled code, 54 MB of source tarballs). Heaviest: stringi 11 MB, data.table 5.7 MB, bslib 5.6 MB.

Depends (1)

R >= 4.2

Imports (8)

flextable officer magrittr dplyr knitr htmltools tidyselect zoo

LinkingTo (0)

none

Suggests (6)

rmarkdown testthat Tplyr rvest withr xml2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (7)

Mike Stackhouse

Author, Maintainer since 0.1.2 (2025)

Author

Author

Contributor

Contributor

Atorus Research, Inc.

Copyright holder

Incyte Corporation

Copyright holder

Releases (4)

Pick two releases to compare their code metrics.

0.4.0Latest
record
2026-08-01 · current release · diff ↗ ·
added 4 exports
clin_header_pad, clin_row_height, clin_spanner_rule, clin_table_align
0.3.1
record
2026-06-02 · diff ↗
R
R 4.6.0 released · 2026-04-24
0.3.0
record
2025-07-07 · diff ↗ ·
removed 1 export
write_clintable

added 10 exports
as_clindoc, clin_add_footnote_page, clin_auto_page, clin_group_pad, clin_replace_pagenums, clindoc, clinify_caption_default, clinify_grouplabel_default, make_grouped_pagenums, write_clindoc
R
R 4.5.0 released · 2025-04-11
0.1.2
record
2025-03-13
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2025-03-13
Total releases: 4 / 1 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.2
Download size: 1.2 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("clinify")

Format

Stackhouse, M., Atorus Research, Inc., Incyte Corporation, Boiko, Y., Didenko, R., Rogoza, R., & Zakirov, M. (2026). clinify: Clinical Table Styling Tools and Utilities (Version 0.4.0) [Computer software]. https://doi.org/10.32614/CRAN.package.clinify

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for clinify version 0.4.0 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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