R Observatory: Metrics for Tplyr version 1.4.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

Tplyr

1.4.1Package record

A Traceability Focused Grammar of Clinical Data Summary

0packages dependsuggested by 2

10Kdownloads / year

95.7%test coverage

13/13flavors OK

Overview

About

Maintained by Mike StackhouseCRAN page ↗GitHub ↗Website ↗Issues ↗

A traceability focused tool created to simplify the data manipulation necessary to create clinical summaries.

Changes in 1.4.1

Bug fixes

Resolve #215 Fix an unnamed empty in f_str() being ignored for descriptive statistics rows where every value is missing, which left the cell blank instead of filling the format string. This was a regression introduced in 1.3.2

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("Tplyr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("atorus-research/Tplyr")

Development version from atorus-research/Tplyr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-tplyr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-Tplyr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-Tplyr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 7.0 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.4.1

READMEYes · 1,287 wordsVignettesYes · 13 · dynamicNEWSYes · 67% structured · mentions 1.4.1Citation fileNoWebsiteYes · pkgdown

Help pages: 70 (6 internal)includes a package overview page
Examples that run: 100%53 run in a plain check
Exported functions with examples: 81%
Documented parameters: 99%
Return-value docs: 90%
Help pages citing references: 0%

Vignettes (13)

Show 3 moreHide 3 vignettes

How these are measured

Downloads

10K

CRAN downloads in the past year

Rank #3,930 · ~28/day · ~837/mo

Releases R versions

Daily download trend is not available in this view yet.

86530 days

2.4K90 days

10K1 year

Compare downloads with other packages →

Also on224 r2u7 autocran1.3K conda_forge

How downloads are counted

Repository

atorus-research/tplyr ↗Organization: atorus-research

110Stars

20Forks

5Open issues

1Open PRs

9Releases

1,667Commits

15Commit identities

pharmartables

1,667 commits · Last activity 2026-08-24 · +0.9% stars, 30d · Discussions: 1 post

Responsiveness

How these are sampled

PRs merged (all time): 94%
Median days to close, 50 most recently updated closed issues: 320
Median days to close, 50 most recently updated closed PRs: 1

Stars over time

2025-05-18 · 982026-10-23 · 110

How these are measured

PracticesBeta

14 development-tooling and community-health practices detected across 7 families in the upstream repository

Checks run against github.com/atorus-research/tplyr on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Governance and community (3)

Contributing guideIssue templatesPR template

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-08-25 · The repository has a site deploy workflow

pkgdown site last built 2026-08-24

Coverage (1)

Coverage reporting

Show all practicesHide 3 practices

Reproducibility and dev environment (1)

data-raw/

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

AI coding toolsBeta

This repository shows signs of AI coding tools.

Kiro, Amazon Q's successorfirst seen 2025-12-09
Named in .Rbuildignore: .kiro
Claude Codefirst seen 2026-01-22
Seen in the repository: CLAUDE.md
Named in .Rbuildignore: .claude, CLAUDE.md
Pull request it wrote: opened by a project member
Commits: at least 18 crediting it in the message

Models named in its commits

Claude Opus 59 commits · Aug 2026
Claude Sonnet 4.54 commits · Feb 2026
Claude Opus 4.83 commits · Jun 2026
Claude Opus 4.52 commits · Jan 2026

Counts are commits, not lines of code. Commits by a tool's accounts count once across all of its accounts. Commits crediting it are the largest count among its credit lines, a minimum.How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

23 external dependencies (excludes base and recommended)

Installing Tplyr adds 22 packages (12 with compiled code, 18 MB of source tarballs). Heaviest: stringi 11 MB, vctrs 1.0 MB, dplyr 902 KB.

Depends (1)

R >= 4.1.0

Imports (11)

rlang assertthat magrittr dplyr purrr stringr tidyr tidyselect tibble lifecycle forcats

LinkingTo (0)

none

Suggests (12)

testthat carrier haven knitr mirai rmarkdown huxtable tidyverse readr kableExtra pharmaRTF withr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 2

Suggests, most downloaded first

logrx clinify

How these are counted

Code & Tests

Datasets

People & History

People (9)

Mike Stackhouse

Author, Maintainer since 0.1.1 (2020)

Eli Miller

Author

Ashley Tarasiewicz

Author

Andrew Bates

Contributor · added in 1.2.0

Shiyu Chen

Contributor · added in 1.2.0

Nathan Kosiba

Contributor

Sadchla Mascary

Contributor · added in 1.1.0

Oleksii Mikryukov

Contributor · added in 1.2.0

Atorus Research LLC

Copyright holder

Releases (21)

Pick two releases to compare their code metrics.

1.4.1Latest
record
2026-08-24 · current release · diff ↗
1.4.0
record
2026-08-23 · diff ↗
1.3.3
record
2026-06-30 · diff ↗
R
R 4.6.0 released · 2026-04-24
1.3.2
record
2026-02-26 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.2.1
record
2024-02-20 · diff ↗ ·
added 1 export
add_anti_join
1.2.0
record
2024-02-14 · diff ↗ ·
added 6 exports
add_missing_subjects_row, collapse_row_labels, get_data_labels, replace_leading_whitespace, set_limit_data_by, set_missing_subjects_row_label
R
R 4.3.0 released · 2023-04-21
1.1.0
record
2023-01-11 · diff ↗ ·
added 4 exports
apply_conditional_format, get_tplyr_regex, str_extract_fmt_group, str_extract_num
1.0.2
record
2022-11-08 · diff ↗
1.0.1
record
2022-10-17 · diff ↗ ·
added 19 exports
%>%, add_filters, add_variables, append_metadata, apply_formats, get_layer_template, get_layer_templates, get_meta_result, get_meta_subset, get_metadata, new_layer_template, process_metadata, remove_layer_template, set_numeric_threshold, set_precision_data, set_stats_as_columns, str_indent_wrap, tplyr_meta, use_template
R
R 4.2.0 released · 2022-04-22
0.4.4
record
2022-01-27 · diff ↗
0.4.3
record
2021-12-06 · diff ↗

Show 12 earlier eventsHide 12 earlier events

0.4.2
record
2021-10-15 · diff ↗
0.4.1
record
2021-07-13 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.4.0
record
2021-02-11 · diff ↗ ·
added 1 export
keep_levels
0.3.1
record
2021-01-08 · diff ↗
0.2.2
record
2020-12-01 · diff ↗
0.2.1
record
2020-11-10 · diff ↗ ·
added 1 export
set_denom_where
0.1.4
record
2020-10-26 · diff ↗
0.1.3
record
2020-10-07 · diff ↗
0.1.2
record
2020-09-29 · diff ↗
0.1.1
record
2020-09-10
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-09-10
Total releases: 21 / 6 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1.0
Bundled data: 49 KB / 5 files
Download size: 814 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("Tplyr")

Format

Stackhouse, M., Atorus Research LLC, Bates, A., Chen, S., Kosiba, N., Mascary, S., Mikryukov, O., Miller, E., & Tarasiewicz, A. (2026). Tplyr: A Traceability Focused Grammar of Clinical Data Summary (Version 1.4.1) [Computer software]. https://doi.org/10.32614/CRAN.package.Tplyr

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for Tplyr version 1.4.1 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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