R Observatory: Metrics for campsis version 1.9.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

campsis

1.9.3Package record

Generic PK/PD Simulation Platform Campsis

1packages depend

7.5Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Nicolas LuyckxCRAN page ↗GitHub ↗Website ↗Issues ↗

A generic, easy-to-use and intuitive pharmacokinetic/pharmacodynamic (PK/PD) simulation platform based on the R packages 'rxode2' and 'mrgsolve'. Campsis provides an abstraction layer over the underlying processes of defining a PK/PD model, assembling a custom dataset and running a simulation. The package has a strong dependency on the R package 'campsismod', which allows models to be read from and written to files, including through a JSON-based interface, and to be adapted further on the fly in the R environment. In addition, 'campsis' allows users to assemble datasets in an intuitive manner, including via a JSON-based interface to import Campsis datasets defined using formal JSON schemas distributed with the package. Once the dataset is ready, the package prepares the simulation, calls 'rxode2' or 'mrgsolve' (at the user's choice), and returns the results for the given model, dataset and desired simulation settings. The package itself is licensed under the GPL (>= 3); the JSON schema files shipped in inst/extdata are licensed separately under the Creative Commons Attribution 4.0 International (CC BY 4.0).

Changes in 1.9.3

Migrate package to campsisverse organisation #230
Fix infusion duration unit conversion based on dataset configuration #228

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("campsis", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("campsisverse/campsis")

Development version from campsisverse/campsis. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-campsis

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-campsis

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-campsis

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 12.4 min · r-release-macos-x86_64

Status changes

OK13 OK2026-09-30
WARNING10 OK, 3 WARNING2026-09-16
OK13 OK2026-08-12
ERROR9 OK, 2 NOTE, 2 ERROR2026-08-04
NOTE12 OK, 1 NOTE2026-07-11

Show 7 earlier changesHide 7 earlier changes

OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-07
WARNING12 OK, 1 WARNING2026-05-06
OK13 OK2026-05-02
ERROR11 OK, 1 ERROR2026-04-25
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.9.3

READMEYes · 99 wordsVignettesYes · 18 · dynamicNEWSYes · 100% structured · mentions 1.9.3Citation fileNoWebsiteYes · pkgdown

Help pages: 263 (85 internal)
Examples that run: no examples
Exported functions with examples: 0%
Documented parameters: 99%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (18)

Get started with Campsis HTML
Bioavailability HTML
Complex PK/PD models from literature HTML
Covariates HTML
Create your dataset HTML
Infusions HTML
Initial conditions HTML
Inter-occasion variability HTML
Interruption events HTML
Lag time HTML

Show 8 moreHide 8 vignettes

How these are measured

Downloads

7.5K

CRAN downloads in the past year

Rank #4,733 · ~20/day · ~623/mo

Releases R versions

Daily download trend is not available in this view yet.

89530 days

1.8K90 days

7.5K1 year

Compare downloads with other packages →

Also on182 r2u19 autocran

How downloads are counted

Repository

campsisverse/campsis ↗Organization: campsisverse

11Stars

4Forks

7Open issues

0Open PRs

36Releases

756Commits

1Commit identities

License file reads as GPL-3.0 · 756 commits · Last activity 2026-10-20

Responsiveness

How these are sampled

PRs merged (all time): 93%
Median days to close, 50 most recently updated closed issues: 10
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-09-02 · 102026-10-19 · 11

Earlier repositories

github.com/calvagone/campsis · last recorded on 2026-10-19

How these are measured

PracticesBeta

10 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/campsisverse/campsis on 2026-10-22.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows

Docs source (2)

README.Rmdpkgdown

Coverage (1)

Coverage reporting (Codecov)

Reproducibility and dev environment (1)

data-raw/

Show all practicesHide 2 practices

CRAN release process (1)

cran-comments.md

Lint, format, editor (3)

AirVS CodeRStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

30 external dependencies (excludes base and recommended)

Installing campsis adds 54 packages (26 with compiled code, 40 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, LaplacesDemon 2.0 MB.

Depends (2)

R >= 4.1.0campsismod

Imports (18)

assertthat digest dplyr furrr future ggplot2 jsonlite jsonvalidate lifecycleMASSmethodsprogressr purrr rlangstatstibble tidyr vctrs

LinkingTo (0)

none

Suggests (14)

bookdown devtools gridExtra knitr mrgsolve pkgdown rmarkdown roxygen2 rxode2 stringr testthat tictoc vdiffr xfun

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Imports 1

Depends, Imports or LinkingTo, most downloaded first

campsisnca

How these are counted

Code & Tests

Datasets

People & History

People (2)

Nicolas Luyckx

Author, Maintainer since 1.2.0 (2022)

Calvagone

Copyright holder · added in 1.9.2

Releases (19)

Pick two releases to compare their code metrics.

1.9.3Latest
record
2026-10-19 · current release · diff ↗ ·
removed 2 exports
preserve_column_levels, remove_column_levels
1.9.2
record
2026-09-24 · diff ↗
1.9.1
record
2026-09-17 · diff ↗ ·
added 2 exports
preserve_column_levels, remove_column_levels
R
R 4.6.0 released · 2026-04-24
1.9.0
record
2026-03-19 · diff ↗ ·
removed 31 exports
VPC, applyAction, applyScenario, dosingOnly, generateIIV, generateIIV_, getAvailableTimeUnits, getCampsisOption, getCampsisOptions, getCovariates, getEventCovariates, getFixedCovariates, getIOVs, getOccasions, getSeedForDatasetExport, getSeedForIteration, getSeedForParametersSampling, getSplittingConfiguration, getTimeVaryingCovariates, getTimes, obsOnly, onCI, onCran, repeatSchedule, retrieveParameterValue, standardiseTime, unwrapTreatment, updateADDL, updateAmount, updateII and 1 more

added 44 exports
DefaultOutfun, NCATableOutfun, Outfuns, PIOutfun, StatsOutfun, apply_action, apply_outfun, apply_scenario, compute_pi, compute_stats, convert_time, dosing_only, generate_iiv, generate_iiv_, get_available_time_units, get_campsis_option, get_campsis_options, get_covariates, get_event_covariates, get_fixed_covariates, get_iovs, get_occasions, get_splitting_configuration, get_time_varying_covariates, get_times, obs_only, on_ci, on_cran, repeat_schedule, retrieve_parameter_value and 14 more
1.8.2
record
2026-03-19 · diff ↗
1.8.1
record
2026-01-28 · diff ↗ ·
added 8 exports
DefaultSettings, DosingSchedule, ReplaceAction, TimeSequence, TimeVector, applyAction, getCampsisOption, getCampsisOptions
R
R 4.5.0 released · 2025-04-11
1.7.0
record
2025-04-04 · diff ↗ ·
added 8 exports
CyclicSchedule, RepeatAtSchedule, repeatSchedule, unwrapTreatment, updateADDL, updateAmount, updateII, updateRepeat
1.6.0
record
2025-02-09 · diff ↗
1.5.5
record
2024-11-26 · diff ↗ ·
added 2 exports
onCI, onCran
1.5.4
record
2024-08-30 · diff ↗
1.5.3
record
2024-07-01 · diff ↗ ·
added 1 export
Outfun
R
R 4.4.0 released · 2024-04-24
1.5.2
record
2024-04-12 · diff ↗ ·
added 10 exports
convertTime, days, getAvailableTimeUnits, hours, minutes, months, seconds, standardiseTime, weeks, years
1.5.1
record
2024-02-16 · diff ↗ ·
added 1 export
Progress

Show 15 earlier eventsHide 15 earlier events

1.5.0
record
2023-10-13 · diff ↗ ·
added 1 export
BinomialDistribution
1.4.1
record
2023-04-24 · diff ↗
R
R 4.3.0 released · 2023-04-21
unarchivedReturned to CRAN
2023-04-13
1.4.0
record
2023-04-13 · diff ↗ ·
added 11 exports
Declare, Hardware, NOCB, Settings, Solver, campsis_handler, generateIIV_, getSplittingConfiguration, scatterPlot, setupPlanDefault, setupPlanSequential
archivedRemoved from CRAN
2023-04-01
check problems were not corrected in time
unarchivedReturned to CRAN
2022-06-01
1.3.0
record
2022-06-01 · diff ↗
archivedRemoved from CRAN
2022-05-24
check problems persisted after reinstatement
unarchivedReturned to CRAN
2022-05-03
1.2.1
record
2022-05-03 · diff ↗ ·
added 1 export
SimulationProgress
archivedRemoved from CRAN
2022-04-22
check problems were not corrected in time
R
R 4.2.0 released · 2022-04-22
1.2.0
record
2022-02-16
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-02-16
Total releases: 19 / 4 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.1.0
Bundled data: 60 KB / 1 file
Download size: 532 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("campsis")

Format

Luyckx, N., & Calvagone. (2026). campsis: Generic PK/PD Simulation Platform Campsis (Version 1.9.3) [Computer software]. https://doi.org/10.32614/CRAN.package.campsis

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for campsis version 1.9.3 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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