R Observatory: Metrics for campsismod version 1.4.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

campsismod

1.4.2Package record

Generic Implementation of a PK/PD Model

2packages depend

7Kdownloads / year

92.3%test coverage

13/13flavors OK

Overview

About

Maintained by Nicolas LuyckxCRAN page ↗GitHub ↗Website ↗Issues ↗

A generic, easy-to-use and expandable implementation of a pharmacokinetic (PK) / pharmacodynamic (PD) model based on the S4 class system. This package allows the user to read and write pharmacometric models from and to files, including a JSON-based interface to import Campsis models defined using a formal JSON schema distributed with the package. Models can be adapted further on the fly in the R environment using an intuitive API to add, modify or delete equations, ordinary differential equations (ODEs), model parameters or compartment properties (such as infusion duration or rate, bioavailability and initial values). The package also provides export facilities for use with the simulation packages 'rxode2' and 'mrgsolve'. The package itself is licensed under the GPL (>= 3); the JSON schema file shipped in inst/extdata is licensed separately under the Creative Commons Attribution 4.0 International (CC BY 4.0). This package is designed and intended to be used with the package 'campsis', a PK/PD simulation platform built on top of 'rxode2' and 'mrgsolve'.

Changes in 1.4.2

Update maintainer's email address

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("campsismod", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Calvagone/campsismod")

Development version from Calvagone/campsismod. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-campsismod

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-campsismod

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-campsismod

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 6.3 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.4.2

READMEYes · 173 wordsVignettesYes · 7 · dynamicNEWSYes · 100% structured · mentions 1.4.2Citation fileNoWebsiteYes · pkgdown

Help pages: 237 (70 internal)
Examples that run: no examples
Exported functions with examples: 0%
Documented parameters: 97%
Return-value docs: 96%
Help pages citing references: 0%

Vignettes (7)

How these are measured

Downloads

7K

CRAN downloads in the past year

Rank #5,358 · ~19/day · ~587/mo

Releases R versions

Daily download trend is not available in this view yet.

71530 days

1.5K90 days

7K1 year

Compare downloads with other packages →

Also on207 r2u15 autocran

How downloads are counted

Repository

campsisverse/campsismod ↗Organization: campsisverse

Moved from calvagone/campsismod.

7Stars

3Forks

6Open issues

0Open PRs

27Releases

473Commits

1Commit identities

License file reads as GPL-3.0 · 473 commits · Last activity 2026-09-30 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 97%
Median days to close, 50 most recently updated closed issues: 5
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2023-03-21 · 52026-08-31 · 7

How these are measured

PracticesBeta

10 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/calvagone/campsismod on 2026-10-22.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (2)

README.Rmdpkgdown

Coverage (1)

Coverage reporting (Codecov)

Reproducibility and dev environment (1)

data-raw/

Show all practicesHide 2 practices

CRAN release process (1)

cran-comments.md

Lint, format, editor (3)

AirVS CodeRStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

20 external dependencies (excludes base and recommended)

Installing campsismod adds 46 packages (24 with compiled code, 37 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, LaplacesDemon 2.0 MB.

Depends (1)

R >= 4.0.0

Imports (16)

assertthat dplyr ggplot2 jsonlite jsonvalidate LaplacesDemon lifecycle magrittrMASSmethodspurrr readr rlang tibble tidyrutils

LinkingTo (0)

none

Suggests (7)

devtools knitr pkgdown rmarkdown roxygen2 testthat xfun

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

Depends 2

Depends, Imports or LinkingTo, most downloaded first

campsis campsisnca

How these are counted

Code & Tests

Datasets

People & History

People (2)

Nicolas Luyckx

Author, Maintainer since 0.8.0 (2022)

Calvagone

Copyright holder · added in 1.4.2

Releases (17)

Pick two releases to compare their code metrics.

1.4.2Latest
record
2026-09-28 · current release · diff ↗
1.4.1
record
2026-09-27 · diff ↗
1.4.0
record
2026-07-30 · diff ↗ ·
removed 43 exports
addRSE, allNa, assertSingleCharacterString, autoDetectNONMEM, exportToJSON, extractLhs, extractRhs, extractTextBetweenBrackets, getCampsismodOption, getCampsismodOptions, getNONMEMName, getOmegaBlock, getOmegaIndexes, getPrefix, getRecordDelimiter, getRecordEquationNames, getRecordName, getVarCov, hasComment, hasExactMethod, hasOffDiagonalOmegas, isComment, isEmptyLine, isEquation, isIfStatement, isMatrixPositiveDefinite, isODE, isRecordDelimiter, isRxODE, isStrictRecordDelimiter and 13 more

added 65 exports
add_rse, add_suffix, all_na, assert_single_character_string, auto_detect_nonmem, export_to_json, extract_lhs, extract_rhs, extract_text_between_brackets, fix_omega, get_by_index, get_by_name, get_campsismod_option, get_campsismod_options, get_compartment_index, get_name, get_name_in_model, get_names, get_nonmem_name, get_omega_block, get_omega_indexes, get_prefix, get_record_delimiter, get_record_equation_names, get_record_name, get_uncertainty, get_var_cov, has_comment, has_exact_method, has_off_diagonal_omegas and 35 more
1.3.2
record
2026-05-07 · diff ↗
R
R 4.6.0 released · 2026-04-24
1.3.1
record
2026-03-17 · diff ↗ ·
added 1 export
hasExactMethod
1.3.0
record
2026-01-27 · diff ↗ ·
added 8 exports
JSONElement, exportToJSON, getCampsismodOption, getCampsismodOptions, jsonToParameter, loadFromJSON, mapJSONPropertiesToS4Slots, mapS4SlotsToJSONProperties
1.2.3
record
2025-07-31 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.2.2
record
2025-03-28 · diff ↗
1.2.1
record
2025-03-17 · diff ↗
1.2.0
record
2025-02-07 · diff ↗ ·
added 14 exports
:=, AutoReplicationSettings, ManualReplicationSettings, OmegaBlock, OmegaBlocks, addRSE, getOmegaBlock, getOmegaIndexes, hasOffDiagonalOmegas, isMatrixPositiveDefinite, move, replicate, setMinMax, shiftOmegaIndexes
1.1.2
record
2024-11-26 · diff ↗ ·
added 1 export
isRxODE
R
R 4.4.0 released · 2024-04-24
1.1.1
record
2024-02-16 · diff ↗
1.1.0
record
2023-10-12 · diff ↗ ·
added 2 exports
allNa, removeNaColumn

Show 7 earlier eventsHide 7 earlier events

R
R 4.3.0 released · 2023-04-21
1.0.0
record
2023-04-11 · diff ↗ ·
added 2 exports
addSuffix, getRecordEquationNames
0.9.0
record
2022-06-17 · diff ↗ ·
removed 1 export
UndefinedPosition

added 2 exports
getUncertainty, getVarCov
0.8.1
record
2022-05-24 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.8.0
record
2022-02-14
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-02-14
Total releases: 17 / 4 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.0.0
Bundled data: 16 KB / 1 file
Download size: 738 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("campsismod")

Format

Luyckx, N., & Calvagone. (2026). campsismod: Generic Implementation of a PK/PD Model (Version 1.4.2) [Computer software]. https://doi.org/10.32614/CRAN.package.campsismod

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for campsismod version 1.4.2 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →