R Observatory: Metrics for bfboinet version 1.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

bfboinet

1.1.0

Backfill Bayesian Optimal Interval Design Using Efficacy and Toxicity

0packages depend

3.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Jing ZhuFirst published 2024-11-186 releasesCRAN page ↗

Implements the Backfill Bayesian Optimal Interval Design (BF-BOIN-ET), a novel clinical trial methodology for dose optimization that simultaneously consider both efficacy and toxicity outcome as described in (Takeda et al (2025) doi:10.1002/pst.2470). The package has been extended to include a seamless two-stage phase I/II trial design with backfill and joint efficacy and toxicity monitoring as described in (Takeda et al (2026) doi:10.1002/pst.70092).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("bfboinet", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bfboinet

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-bfboinet

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-bfboinet

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.0 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

8

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 173 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 100%

Downloads

3.3K

CRAN downloads in the past year

Rank #8,843 · ~9/day · ~277/mo

Releases R versions

Daily download trend is not available in this view yet.

24530 days

1K90 days

3.3K1 year

Compare downloads with other packages →

Also on198 r2u67 autocran

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (8)

Iso copula dplyr tidyselect magrittr BOP2FE boinet BOIN

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Jing Zhu

Maintainer, Author

Authors (3)

Jing Zhu

Maintainer, Author

Kentaro Takeda

Author

Belay Birlie Yimer

Author · added in 1.1.0

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

1.1.0Latest
2026-04-29 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
1.0.0
2026-04-14 · diff ↗
0.4.0
2025-06-03 · diff ↗
0.3.0
2025-05-26 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.2.0
2025-02-10 · diff ↗
0.1.0
2024-11-18
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-11-18
Total releases: 6 / 2 yrs
License: GPL-3 OSI
Download size: 40 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("bfboinet")

Format

Zhu, J., Takeda, K., & Yimer, B. B. (2026). bfboinet: Backfill Bayesian Optimal Interval Design Using Efficacy and Toxicity (Version 1.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.bfboinet

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for bfboinet version 1.1.0 [Data set]. HJJB, LLC. Data release v2026-08-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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