TrenchR
Tools for Microclimate and Biophysical Ecology
v1.1.1
·
Sep 13, 2023
·
MIT + file LICENSE
Description
Tools for translating environmental change into organismal response. Microclimate models to vertically scale weather station data to organismal heights. The biophysical modeling tools include both general models for heat flows and specific models to predict body temperatures for a variety of ectothermic taxa. Additional functions model and temporally partition air and soil temperatures and solar radiation. Utility functions estimate the organismal and environmental parameters needed for biophysical ecology. 'TrenchR' focuses on relatively simple and modular functions so users can create transparent and flexible biophysical models. Many functions are derived from Gates (1980) <doi:10.1007/978-1-4612-6024-0> and Campbell and Norman (1988) <isbn:9780387949376>.
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14
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | NOTE |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | NOTE |
| r-release-macos-arm64 | NOTE |
| r-release-macos-x86_64 | NOTE |
| r-release-windows-x86_64 | NOTE |
Check details (14 non-OK)
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checkRd: (-1) DRYAIR.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:41: Lost braces in
...[truncated]...
{} directly
checkRd: (-1) WETAIR.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:41: Lost braces in
...[truncated]...
{} directly
checkRd: (-1) WETAIR.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:41: Lost braces in
...[truncated]...
{} directly
checkRd: (-1) WETAIR.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:41: Lost braces in
...[truncated]...
{} directly
checkRd: (-1) WETAIR.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:41: Lost braces in
...[truncated]...
{} directly
checkRd: (-1) WETAIR.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WETAIR.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
Check History
NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
on_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
on_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
on_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
on_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
on_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
on_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
on_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
on_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
on_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
on_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
on_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
on_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
on_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) DRYAIR.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DRYAIR.Rd:20: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
on_sineexp.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diurnal_temp_variation_sineexp.Rd:44: Lost braces in \itemize; meant \describe ?