R Observatory: Metrics for logrx version 0.4.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

logrx

0.4.0Package record

A Logging Utility Focus on Clinical Trial Programming Workflows

1packages dependsuggested by 1

11Kdownloads / year

90.7%test coverage

13/13flavors OK

Overview

About

Maintained by Nathan KosibaCRAN page ↗GitHub ↗Website ↗Issues ↗Declared funder: GSK/Atorus JPT

A utility to facilitate the logging and review of R programs in clinical trial programming workflows.

Changes in 0.4.0

New Features

Adds the optional extra_info parameter to axecute() which lets users pass a list object through to the extra info section of the log. The object will be printed according to the YAML format (#180)

Updates

The Shiny Addin has been removed from this Package (#207)
A standalone package for the Shiny Addin has been created
See logrxaddin for more information
Adds unit tests for write_repo_urls() and get_repo_urls() internal functions.
Extend testing unexported function use (#208)
Swap in lintr::library_call_linter() for local version of library_call_linter() (#221)
Update read_log_file() for updated version of {sessioninfo} #246

Show all changes in 0.4.0Hide the rest of the changes in 0.4.0

Documentation

Add vignette for creating a lockfile (#233)

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("logrx", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("pharmaverse/logrx")

Development version from pharmaverse/logrx. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-logrx

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-logrx

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-logrx

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.5 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.4.0

READMEYes · 392 wordsVignettesYes · 5 · dynamicNEWSYes · 100% structured · mentions 0.4.0Citation fileNoWebsiteYes · pkgdown

The repository also keeps web-only articles.

Help pages: 11
Examples that run: 64%7 run in a plain check · 4 never run
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (5)

logrxpackage HTML
Generate renv lockfile from log file HTML
Generating a Log HTML
Logging Unapproved Package and Function Use HTML
logrx Options HTML

How these are measured

Downloads

11K

CRAN downloads in the past year

Rank #3,941 · ~30/day · ~916/mo

Releases R versions

Daily download trend is not available in this view yet.

90530 days

2.3K90 days

11K1 year

Compare downloads with other packages →

Also on161 r2u6 autocran395 conda_forge

How downloads are counted

Repository

pharmaverse/logrx ↗Organization: pharmaverse

48Stars

12Forks

30Open issues

1Open PRs

10Releases

856Commits

16Commit identities

856 commits · Last activity 2026-10-17 · 0% stars, 30d · Default branch at 0.4.0.9000, ahead of CRAN 0.4.0 (checked 2026-10-18) · Discussions: 2 posts

Responsiveness

How these are sampled

PRs merged (all time): 92%
Median days to close, 50 most recently updated closed issues: 248
Median days to close, 50 most recently updated closed PRs: 6

Stars over time

2025-05-20 · 442026-07-07 · 48

How these are measured

PracticesBeta

13 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/pharmaverse/logrx on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux and Windows, and on R-devel

Governance and community (4)

Code of conductContributing guideIssue templatesPR template

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-10-17 · The repository has a site deploy workflow

pkgdown site last built 2025-07-28

Reproducibility and dev environment (1)

data-raw/

Show all practicesHide 1 practice

Lint, format, editor (2)

Lint workflowRStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

AI coding toolsBeta

This repository shows signs of AI coding tools.

GitHub Copilotfirst seen 2026-02-11
Pull request: opened by its own account
Commits: 22 by its own account

Counts are commits, not lines of code. Commits by a tool's accounts count once across all of its accounts. Commits crediting it are the largest count among its credit lines, a minimum.How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

27 external dependencies (excludes base and recommended)

Installing logrx adds 22 packages (13 with compiled code, 18 MB of source tarballs). Heaviest: stringi 11 MB, vctrs 1.0 MB, dplyr 902 KB.

Depends (1)

R >= 4.0.0

Imports (13)

dplyr magrittr purrr rlangstatstidyr stringr sessioninfo stringi tibble digest lifecyclemethods

LinkingTo (0)

none

Suggests (16)

testthat knitr rmarkdown withr covr pkgdown Tplyr haven lintr xml2 here readr rstudioapi tidyselect renv yaml

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Imports 1

Suggested by 1

Depends, Imports or LinkingTo, most downloaded first

logrxaddin

Suggests, most downloaded first

abba

How these are counted

Code & Tests

Datasets

People & History

People (7)

Nathan Kosiba

Author, Maintainer since 0.1.0 (2022)

Thomas Bermudez

Author

Nicholas Masel

Author

Sam Parmar

Author · added in 0.3.0

Michael Rimler

Author

Ben Straub

Author

GSK/Atorus JPT

Copyright holder, Funder

Releases (9)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.4.0Latest
record
2025-05-05 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
0.3.2
record
2025-02-19 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.3.1
record
2024-04-12 · diff ↗
0.3.0
record
2023-10-17 · diff ↗ ·
added 1 export
read_log_file
0.2.2
record
2023-06-16 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.2.1
record
2023-02-03 · diff ↗
0.2.0
record
2023-01-18 · diff ↗ ·
removed 24 exports
approved_functions_init, get_file_path, get_log_element, get_logrx_metadata, get_masked_functions, get_session_info, get_unapproved_use, get_used_functions, log_cleanup, logrxAddin, loudly, run_safely_loudly, set_log_element, set_log_name_path, write_errors, write_file_name_path, write_log_element, write_masked_functions, write_messages, write_metadata, write_output, write_result, write_session_info, write_warnings
0.1.1
record
2022-09-12 · diff ↗
0.1.0
record
2022-06-17
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-06-17
Total releases: 9 / 4 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.0.0
Bundled data: 0.2 KB / 1 file
Download size: 458 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("logrx")

Format

Kosiba, N., GSK/Atorus JPT, Bermudez, T., Masel, N., Parmar, S., Rimler, M., & Straub, B. (2025). logrx: A Logging Utility Focus on Clinical Trial Programming Workflows (Version 0.4.0) [Computer software]. https://doi.org/10.32614/CRAN.package.logrx

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for logrx version 0.4.0 [Data set]. HJJB, LLC. Data release v2026-10-20. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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