R Observatory: Metrics for TML version 2.3.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

TML

2.3.0

Tropical Geometry Tools for Machine Learning

0packages depend

2.2Kdownloads / year

22.2%test coverage

13/13checks pass

Overview

About

Maintained by David BarnhillFirst published 2023-07-104 releasesCRAN page ↗GitHub ↗

Suite of tropical geometric tools for use in machine learning applications. These methods may be summarized in the following references: Yoshida, et al. (2022) doi:10.2140/astat.2023.14.37, Barnhill et al. (2023) doi:10.48550/arXiv.2303.02539, Barnhill and Yoshida (2023) doi:10.3390/math11153433, Aliatimis et al. (2023) doi:10.1007/s11538-024-01327-8, Yoshida et al. (2022) doi:10.1109/TCBB.2024.3420815, and Yoshida et al. (2019) doi:10.1007/s11538-018-0493-4.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("TML", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("barnhilldave/TML")

Development version from barnhilldave/TML. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-tml

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-TML

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

Slowest check: 5.7 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.10

22.2%

Coverage · measured lines

100%

Documentation · exports

18

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 2 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 82%
Documented parameters: 100%
Return-value docs: 100%
References docs: 56%

Downloads

2.2K

CRAN downloads in the past year

Rank #14,320 · ~6/day · ~187/mo

Releases R versions

Daily download trend is not available in this view yet.

25830 days

71790 days

2.2K1 year

Compare downloads with other packages →

Also on126 r2u

Repository

GitHub ↗ barnhilldave/tml

3Stars

1Forks

1Open issues

0Open PRs

0Releases

54Commits

5Contributors

54 commits · Last activity 2024-07-29

Stars over time

2024-10-18 · 32026-07-07 · 3

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/barnhilldave/tml on 2026-08-16.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (18)

MASSMatrixRcppAlgos Rfast combinat gtools lpSolve lpSolveAPI miscTools phangorn rcdd rgl ape phytools mapsclusterROCRstats

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

David Barnhill

Author, Maintainer

Authors (4)

David Barnhill

Author, Maintainer

Georgios Aliatimis

Author · added in 1.1.0

Keiji Miura

Author

Ruriko Yoshida

Author

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
2.3.0Latest
2024-07-29 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
1.2.0
2023-12-14 · diff ↗
1.1.0
2023-09-03 · diff ↗
0.1.0
2023-07-10
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-07-10
Total releases: 4 / 3 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Bundled data: 1.8 MB / 4 files
Download size: 1.9 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("TML")

Format

Barnhill, D., Aliatimis, G., Miura, K., & Yoshida, R. (2024). TML: Tropical Geometry Tools for Machine Learning (Version 2.3.0) [Computer software]. https://doi.org/10.32614/CRAN.package.TML

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for TML version 2.3.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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