R Observatory: Metrics for LGRF version 1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

LGRF

1.0Package record

Set-Based Tests for Genetic Association in Longitudinal Studies

0packages depend

2.2Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Zihuai HeCRAN page ↗

Functions for the longitudinal genetic random field method (He et al., 2015, doi:10.1111/biom.12310) to test the association between a longitudinally measured quantitative outcome and a set of genetic variants in a gene/region.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)

install.packages("LGRF", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-lgrf

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-LGRF

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Zihuai He <zihuai@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zihuai",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "zihuai@umich.edu")
as necessary.

CRAN check page ↗

Slowest check: 2.0 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTE2026-06-09
ERROR11 OK, 1 NOTE, 1 ERROR2026-06-08
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 7
Examples that run: 71%5 run in a plain check · 2 hold no code
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 100%

How these are measured

Downloads

2.2K

CRAN downloads in the past year

Rank #22,066 · ~6/day · ~186/mo

Releases R versions

Daily download trend is not available in this view yet.

23230 days

60090 days

2.2K1 year

Compare downloads with other packages →

Also on67 r2u

How downloads are counted

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Installing LGRF adds 29 packages (19 with compiled code, 23 MB of source tarballs). Heaviest: stringi 11 MB, Rcpp 1.8 MB, RcppEigen 1.7 MB.

Depends (3)

CompQuadForm SKAT geepack

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (1)

Zihuai He

Maintainer since 1.0 (2015)

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.0Latest
record
2015-09-13 · current release
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2015-09-13
Total releases: 1 / 11 yrs
License: GPL-3 OSI
Bundled data: 14 KB / 1 file
Download size: 24 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("LGRF")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for LGRF version 1.0 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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