R Observatory: Metrics for RevGadgets version 1.2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

RevGadgets

1.2.1Package record

Visualization and Post-Processing of 'RevBayes' Analyses

0packages dependsuggested by 1

3.7Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Carrie TribbleCRAN page ↗GitHub ↗Website ↗Issues ↗

Processes and visualizes the output of complex phylogenetic analyses from the 'RevBayes' phylogenetic graphical modeling software.

Changes in 1.2.1

Patch release to fix testing failures on development R, no changes to functions.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("RevGadgets", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("revbayes/RevGadgets")

Development version from revbayes/RevGadgets. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-revgadgets

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.9 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09

Show 4 earlier changesHide 4 earlier changes

ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-10
ERROR12 OK, 1 ERROR2026-05-03
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.2.1

READMEYes · 334 wordsVignettesNoNEWSYes · 100% structured · mentions 1.2.1Citation fileNoWebsiteYes

Help pages: 37includes a package overview page
Examples that run: 24%8 run in a plain check · 24 only when donttest examples are enabled (R CMD check --as-cran) · 2 never run
Exported functions with examples: 97%
Documented parameters: 100%
Return-value docs: 97%
Help pages citing references: 14%

How these are measured

Downloads

3.7K

CRAN downloads in the past year

Rank #12,154 · ~10/day · ~309/mo

Releases R versions

Daily download trend is not available in this view yet.

30930 days

90890 days

3.7K1 year

Compare downloads with other packages →

Also on101 r2u66 c2d4u

How downloads are counted

Repository

revbayes/revgadgets ↗Organization: revbayes

14Stars

9Forks

6Open issues

0Open PRs

6Releases

609Commits

23Commit identities

609 commits · Last activity 2023-11-29 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 95%
Median days to close, 50 most recently updated closed issues: 79
Median days to close, 50 most recently updated closed PRs: 1

Stars over time

2024-01-03 · 132026-07-07 · 14

How these are measured

PracticesBeta

5 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/revbayes/revgadgets on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

CRAN release process (3)

cran-comments.mdrevdep/CRAN-SUBMISSION

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

21 external dependencies (excludes base and recommended)

Installing RevGadgets adds 113 packages (57 with compiled code, 96 MB of source tarballs). Heaviest: stringi 11 MB, deeptime 7.4 MB, ggplot2 6.0 MB. 2 more not on CRAN are not measured.

Depends (1)

R >= 4.2.0

Imports (21)

ape phytools dplyr ggtree tidytree treeio ggplot2 reshapemethodstidyr (>= 1.1.0)tibble gginnards ggplotify (>= 0.0.5)ggpp ggimage pngstatsutilsgrDevicesdeeptime scales

LinkingTo (0)

none

Suggests (4)

testthat knitr rmarkdown phangorn

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

Revticulate

How these are counted

Code & Tests

Datasets

People & History

People (12)

Carrie Tribble

Author, Maintainer since 1.0.0 (2021)

Joelle Barido-Sottani

Author

Ronja J. Billenstein

Author · added in 1.2.0

Author

Author

Author

Author

Author

Author

Author

Contributor

Contributor

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.2.1Latest
record
2023-11-29 · current release · diff ↗
1.2.0
record
2023-11-16 · diff ↗ ·
added 2 exports
plotPopSizes, processPopSizes
unarchivedReturned to CRAN
2023-05-25
1.1.1
record
2023-05-25 · diff ↗
archivedRemoved from CRAN
2023-05-18
issues were not corrected in time
R
R 4.3.0 released · 2023-04-21
unarchivedReturned to CRAN
2022-12-03
1.1.0
record
2022-12-03 · diff ↗ ·
added 2 exports
plotDiversityOBDP, readOBDP
R
R 4.2.0 released · 2022-04-22
archivedRemoved from CRAN
2022-04-04
'coercion to logical' errors were not corrected in time
1.0.0
record
2021-09-13
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-09-13
Total releases: 5 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.2.0
Download size: 799 KB

Appears in task views

Phylogenetics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("RevGadgets")

Format

Tribble, C., Barido-Sottani, J., Billenstein, R. J., Freyman, W. A., Hohna, S., Kengo, N., Klaus, S., Kopperud, B. T., Landis, M. J., Magee, A., May, M. R., & Ying, L. J. (2023). RevGadgets: Visualization and Post-Processing of 'RevBayes' Analyses (Version 1.2.1) [Computer software]. https://doi.org/10.32614/CRAN.package.RevGadgets

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for RevGadgets version 1.2.1 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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