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bedr

Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'

v1.1.5 · Jan 23, 2026 · GPL-2

Description

Genomic regions processing using open-source command line tools such as 'BEDTools', 'BEDOPS' and 'Tabix'. These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging. bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.

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CRAN Check Status

14 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (2)

imports

Dependency Network

Dependencies Reverse dependencies testthat VennDiagram data.table (>= 1.8.11) R.utils yaml Ravages chicane bedr

Version History

new 1.1.5 Mar 10, 2026
updated 1.1.5 ← 1.1.3 diff Jan 23, 2026
updated 1.1.3 ← 1.0.7 diff Apr 5, 2025
updated 1.0.7 ← 1.0.6 diff Mar 31, 2019
updated 1.0.6 ← 1.0.4 diff Jan 12, 2019
updated 1.0.4 ← 1.0.3 diff Oct 12, 2017
updated 1.0.3 ← 1.0.2 diff Aug 22, 2016
updated 1.0.2 ← 1.0.1 diff Sep 20, 2015
updated 1.0.1 ← 1.0.0 diff Sep 4, 2015
new 1.0.0 Sep 3, 2015