R Observatory: Metrics for MACP version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2024-05-04. Its history is shown below.

Reason: issues were not corrected in time

Details below reflect version 0.1.0, its last release before removal.

MACP

0.1.0Package record

Macromolecular Assemblies from Co-Elution Profile (MACP)

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Matineh RahmatbakhshCRAN page ↗GitHub ↗

The MACP employs machine learning algorithm for automated scoring of co-fractionation mass spectrometry (CF-MS) and then systematically map multi-protein complexes from these high-confidence protein-protein interactions (PPIs) using unsupervised learning (i.e., clustering).

Install

R (source archive)pak (dev)

url <- "https://cran.r-project.org/src/contrib/Archive/MACP/MACP_0.1.0.tar.gz"
pkgFile <- "MACP_0.1.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("mrbakhsh/MACP")

Development version from mrbakhsh/MACP. Installs pak first if it is not already available.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.0

READMEYes · 180 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 21
Examples that run: 100%11 run in a plain check
Exported functions with examples: 58%
Documented parameters: 97%
Return-value docs: 100%
Help pages citing references: 10%

How these are measured

Downloads

MACP Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on37 r2u

How downloads are counted

Dependencies

Declared dependencies

34 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

Imports (17)

statszooutilsdplyr lsa WGCNA tidyr tibble Hmisc igraph PRROC pROC ggplot2grDevicesfmsb stringr caret

LinkingTo (0)

none

Suggests (20)

knitr ptw e1071 kernlab ranger proxy infotheo gridExtra philentropy randomForest gprofiler2 purrr minet entropy MCL orthogene protti arules rmarkdown BiocStyle

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Matineh Rahmatbakhsh

Contributor

Mohan Babu

Contributor

Maintainer since 0.1.0 (2023)

Releases (1)

R
R 4.5.0 released · 2025-04-11
archivedRemoved from CRAN
2024-05-04
issues were not corrected in time
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.0
record
2023-02-28
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2023-02-28
Total releases: 1 / 3 yrs
License: BSD_3_clause + file LICENSE OSI
Minimum R: ≥ 4.1
Bundled data: 20 KB / 2 files

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("MACP")

Format

Rahmatbakhsh, M., & Babu, M. (n.d.). MACP: Macromolecular Assemblies from Co-Elution Profile (MACP) (Version 0.1.0) [Computer software]. Retrieved October 25, 2026, from https://CRAN.R-project.org/package=MACP

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MACP version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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