R Observatory: Metrics for JMbayes2 version 0.6-0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

JMbayes2

0.6-0

Extended Joint Models for Longitudinal and Time-to-Event Data

5packages depend

15.6Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Dimitris RizopoulosFirst published 2021-01-1116 releasesCRAN page ↗GitHub ↗

Fit joint models for longitudinal and time-to-event data under the Bayesian approach. Multiple longitudinal outcomes of mixed type (continuous/categorical) and multiple event times (competing risks and multi-state processes) are accommodated. Rizopoulos (2012, ISBN:9781439872864).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("JMbayes2", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("drizopoulos/JMbayes2")

Development version from drizopoulos/JMbayes2. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-jmbayes2

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-JMbayes2

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-JMbayes2

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 6.3 min · r-oldrel-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

14

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 1 earlier snapshots

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 250 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 30%
Documented parameters: 90%
Return-value docs: 91%
References docs: 38%

Downloads

15.6K

CRAN downloads in the past year

Rank #3,303 · ~43/day · ~1.3K/mo

Releases R versions

Daily download trend is not available in this view yet.

93730 days

3.3K90 days

15.6K1 year

Compare downloads with other packages →

Also on442 r2u23 autocran2.9K conda_forge

Repository

GitHub ↗ drizopoulos/jmbayes2

103Stars

27Forks

1Open issues

0Open PRs

3Releases

1,350Commits

4Contributors

mixed-modelslongitudinal-analysissurvival-modelsmulti-statecompeting-risksprediction-modelpersonalized-medicineprecision-medicine

1,350 commits · Last activity 2026-08-21 · +2% stars, 30d

Stars over time

2025-08-14 · 892026-08-14 · 103

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/drizopoulos/jmbayes2 on 2026-08-16.

Continuous integration (1)

GitHub Actions

Docs source (1)

README.Rmd

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Depends (4)

survivalnlmeGLMMadaptivesplines

Imports (10)

coda Rcppparallelparallelly matrixStats ggplot2 gridExtra abindMASSsurvC1

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (4)

latticeknitr rmarkdown pkgdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

5direct

0indirect

JMbdirect jmBIG INLAjoint gmfamm landmaRk

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Dimitris Rizopoulos

Author, Maintainer

Authors (3)

Dimitris Rizopoulos

Author, Maintainer

Pedro Miranda-Afonso

Author · added in 0.6-0

Grigorios Papageorgiou

Author

Listed in earlier versions (1)

Pedro Miranda Afonso

no longer listed · 0.1-1 to 0.5-7

Package Timeline

16 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.6-0Latest
2026-01-28 · current release · diff ↗
0.5-7
2025-06-16 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.5-2
2025-02-28 · diff ↗
0.5-0
2024-05-30 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.4-5
2023-06-26 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.4-0
2023-03-13 · diff ↗
0.3-0
2022-09-09 · diff ↗
0.2-8
2022-07-05 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.2-0
2022-02-10 · diff ↗
0.1-8
2021-09-02 · diff ↗
0.1-7
2021-07-07 · diff ↗

Show 7 earlier events

R
R 4.1.0 released · 2021-05-18
0.1-6
2021-05-12 · diff ↗
0.1-5
2021-03-08 · diff ↗
0.1-3
2021-01-18 · diff ↗
0.1-2
2021-01-13 · diff ↗
0.1-1
2021-01-11
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-01-11
Total releases: 16 / 5 yrs
License: GPL (>= 3) OSI
Bundled data: 125 KB / 6 files
Download size: 325 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("JMbayes2")

Format

Rizopoulos, D., Miranda-Afonso, P., & Papageorgiou, G. (2026). JMbayes2: Extended Joint Models for Longitudinal and Time-to-Event Data (Version 0.6-0) [Computer software]. https://doi.org/10.32614/CRAN.package.JMbayes2

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for JMbayes2 version 0.6-0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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