R Observatory: Metrics for JMbayes2 version 0.6-5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

JMbayes2

0.6-5Package record

Extended Joint Models for Longitudinal and Time-to-Event Data

2packages dependsuggested by 3

14.3Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Dimitris RizopoulosCRAN page ↗GitHub ↗Website ↗Issues ↗

Fit joint models for longitudinal and time-to-event data under the Bayesian approach. Multiple longitudinal outcomes of mixed type (continuous/categorical) and multiple event times (competing risks and multi-state processes) are accommodated. Rizopoulos (2012, ISBN:9781439872864).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("JMbayes2", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("drizopoulos/JMbayes2")

Development version from drizopoulos/JMbayes2. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-jmbayes2

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-JMbayes2

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-JMbayes2

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 5.6 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK12 OK2026-04-25
NOTE12 OK, 2 NOTE2026-04-22
ERROR11 OK, 2 NOTE, 1 ERROR2026-04-18

Show 1 earlier changeHide 1 earlier change

NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.6-5

READMEYes · 250 wordsVignettes· In the repository, left out of the releaseNEWSYes · 100% structured · does not mention 0.6-5Citation fileNoWebsiteYes · pkgdown

Help pages: 16includes a package overview page
Examples that run: 30%3 run in a plain check · 6 only when donttest examples are enabled (R CMD check --as-cran) · 1 never run
Exported functions with examples: 82%
Documented parameters: 90%
Return-value docs: 91%
Help pages citing references: 38%

How these are measured

Downloads

14.3K

CRAN downloads in the past year

Rank #3,235 · ~39/day · ~1.2K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.4K30 days

3.6K90 days

14.3K1 year

Compare downloads with other packages →

Also on396 r2u11 autocran2.7K conda_forge

How downloads are counted

Repository

drizopoulos/jmbayes2 ↗Account: drizopoulos

106Stars

27Forks

0Open issues

0Open PRs

3Releases

1,425Commits

4Commit identities

mixed-modelslongitudinal-analysissurvival-modelsmulti-statecompeting-risksprediction-modelpersonalized-medicineprecision-medicine

1,425 commits · Last activity 2026-10-08 · +1.9% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 50%
Median days to close, 50 most recently updated closed issues: 2
Median days to close, 50 most recently updated closed PRs: 1

Stars over time

2025-08-14 · 892026-10-09 · 106

How these are measured

PracticesBeta

6 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/drizopoulos/jmbayes2 on 2026-10-11.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on macOS and Windows

Docs source (3)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-10-08

pkgdown site last built 2026-09-25, before release 0.6-5 (2026-10-15)

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Installing JMbayes2 adds 26 packages (12 with compiled code, 18 MB of source tarballs). Heaviest: ggplot2 6.0 MB, Rcpp 1.8 MB, isoband 1.5 MB.

Depends (4)

survivalnlmeGLMMadaptivesplines

Imports (10)

coda Rcppparallelparallelly matrixStats ggplot2 gridExtra abindMASSsurvC1

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (4)

latticeknitr rmarkdown pkgdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

Imports 2

Suggested by 3

Depends, Imports or LinkingTo, most downloaded first

JMbdirect jmBIG

Suggests, most downloaded first

INLAjoint landmaRk gmfamm

How these are counted

Code & Tests

Datasets

People & History

People (3)

Dimitris Rizopoulos

Author, Maintainer since 0.1-1 (2021)

Pedro Miranda-Afonso

Author · added in 0.6-0

Grigorios Papageorgiou

Author

Listed in earlier versions (1)

Pedro Miranda Afonso

no longer listed · 0.1-1 to 0.5-7

Releases (17)

Pick two releases to compare their code metrics.

0.6-5Latest
record
2026-10-15 · current release · diff ↗ ·
listed once in CRAN's queue
Seen in one reading of CRAN's incoming queue, at 2026-10-15 17:32 UTC, so it stayed less than the time between readings.
R
R 4.6.0 released · 2026-04-24
0.6-0
record
2026-01-28 · diff ↗ ·
added 8 exports
Delta, variogram, ppcheck, slicer, consensus, lme, coxph, mixed_model
0.5-7
record
2025-06-16 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.5-2
record
2025-02-28 · diff ↗
0.5-0
record
2024-05-30 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.4-5
record
2023-06-26 · diff ↗ ·
added 1 export
vabs
R
R 4.3.0 released · 2023-04-21
0.4-0
record
2023-03-13 · diff ↗ ·
added 5 exports
tvEPCE, velocity, acceleration, coefs, create_folds
0.3-0
record
2022-09-09 · diff ↗
0.2-8
record
2022-07-05 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.2-0
record
2022-02-10 · diff ↗ ·
removed 1 export
crLong

added 5 exports
crisk_setup, rc_setup, poly2, poly3, poly4
0.1-8
record
2021-09-02 · diff ↗

Show 8 earlier eventsHide 8 earlier events

0.1-7
record
2021-07-07 · diff ↗ ·
added 3 exports
calibration_metrics, calibration_plot, tvBrier
R
R 4.1.0 released · 2021-05-18
0.1-6
record
2021-05-12 · diff ↗ ·
added 2 exports
tvAUC, tvROC
0.1-5
record
2021-03-08 · diff ↗ ·
added 8 exports
vexpit, Dexpit, vexp, Dexp, vlog, vlog2, vlog10, vsqrt
0.1-3
record
2021-01-18 · diff ↗
0.1-2
record
2021-01-13 · diff ↗
0.1-1
record
2021-01-11
R
R 4.0.0 released · 2020-04-24

Across CRAN, the median accepted release of the past year spent 19 hours in the queue, 90% under 11 days.How queue time is measured

Package metadata

First published: 2021-01-11
Total releases: 17 / 5 yrs
License: GPL (>= 3) OSI
Bundled data: 125 KB / 6 files
Download size: 339 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("JMbayes2")

Format

Rizopoulos, D., Miranda-Afonso, P., & Papageorgiou, G. (2026). JMbayes2: Extended Joint Models for Longitudinal and Time-to-Event Data (Version 0.6-5) [Computer software]. https://doi.org/10.32614/CRAN.package.JMbayes2

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for JMbayes2 version 0.6-5 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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